Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.9e-72 273.9 157 100.0
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.3e-54 214.9 157 85.4
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 9.7e-54 213.8 157 76.4
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.8e-53 211.5 157 77.7
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-52 208.4 157 76.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.1e-52 208.4 157 77.7
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 8.5e-50 200.7 161 75.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.6e-48 196.4 159 78.6
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 4.6e-48 194.9 164 74.4
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 6.1e-48 194.5 157 75.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-44 182.2 118 81.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 7.9e-40 167.5 112 81.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 8.8e-39 164.1 129 74.4
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-38 163.7 129 73.6
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 2.6e-38 162.5 129 73.6
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-35 153.7 178 55.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.6e-35 152.5 181 56.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 3.5e-35 152.1 159 64.2
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-34 150.6 117 80.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-34 149.8 178 56.2
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-34 149.8 178 56.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-34 149.8 178 56.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-34 147.9 172 58.1
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 6.5e-34 147.9 178 55.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.2e-33 145.2 178 55.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-32 143.3 184 53.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 2.1e-32 142.9 127 66.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 8.0e-32 141.0 170 57.6
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.3e-31 139.4 177 54.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.3e-31 139.4 181 54.7
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-31 138.7 170 58.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 4.0e-31 138.7 170 58.8
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.7e-31 137.9 188 52.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.2e-30 137.1 190 52.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-30 135.6 177 55.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.2e-29 132.9 188 53.7
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-28 130.2 152 55.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.5e-27 125.2 188 50.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.8e-21 105.9 124 50.8
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.1e-20 102.1 135 49.6
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 7.0e-20 101.3 120 50.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 7.0e-20 101.3 126 50.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.0e-19 99.8 151 49.7
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.7e-19 99.4 161 41.0
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.5e-19 99.0 140 47.9
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.9e-19 98.2 139 46.0
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 7.7e-19 97.8 140 45.7
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 7.7e-19 97.8 140 45.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.3e-18 97.1 157 45.9
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.7e-18 96.7 151 43.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.3e-18 96.3 130 47.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.9e-18 95.9 147 43.5
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.9e-18 95.9 130 47.7
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.8e-18 95.5 147 49.7
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.8e-18 95.5 121 57.9
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.8e-18 95.5 139 47.5
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 8.6e-18 94.4 128 44.5
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 8.6e-18 94.4 143 44.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.1e-17 94.0 124 54.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.1e-17 94.0 121 49.6
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.5e-17 92.8 131 46.6
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.5e-17 92.8 128 43.8
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.3e-17 92.4 147 47.6
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.5e-17 91.7 135 51.9
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.2e-17 91.3 141 42.6
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.2e-16 90.5 161 46.0
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.6e-16 90.1 156 43.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 2.1e-16 89.7 142 48.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.8e-16 89.4 107 49.5
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.7e-16 88.6 132 43.2
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.7e-16 88.6 190 40.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.1e-16 88.2 160 41.9
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.0e-16 87.8 125 46.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.0e-15 87.4 138 50.0
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.4e-15 87.0 130 42.3
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.8e-15 86.7 131 42.7
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.3e-15 86.3 124 45.2
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.3e-15 86.3 132 43.2
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.3e-15 86.3 130 42.3
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.0e-15 85.9 139 45.3
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.0e-15 85.9 160 44.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.0e-15 85.5 158 46.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 8.9e-15 84.3 122 45.9
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.0e-14 83.2 159 39.0
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.0e-14 83.2 88 52.3
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.6e-14 82.8 109 55.0
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.6e-14 82.8 148 43.2
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.4e-14 82.4 79 58.2
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.4e-14 82.4 123 44.7
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 4.4e-14 82.0 137 49.6
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 4.4e-14 82.0 128 43.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 5.7e-14 81.6 157 42.7
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 7.5e-14 81.3 122 46.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.5e-14 81.3 161 36.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 9.8e-14 80.9 115 47.0
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 9.8e-14 80.9 169 39.1
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.7e-13 80.1 148 41.9
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.7e-13 80.1 167 43.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.7e-13 80.1 158 43.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.2e-13 79.7 148 41.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 8.3e-13 77.8 70 58.6
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 8.3e-13 77.8 125 44.8
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.4e-12 77.0 77 54.5
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-12 77.0 122 42.6
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.8e-12 76.6 128 45.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 7.0e-12 74.7 124 43.5
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.2e-11 73.9 84 51.2
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.2e-11 73.9 145 37.9
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.2e-11 73.9 145 37.9
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.6e-11 73.6 175 41.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.6e-11 73.6 164 40.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.0e-11 73.2 163 37.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.0e-11 73.2 146 39.0
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.0e-11 73.2 154 40.3
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.7e-11 72.8 93 45.2
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.7e-11 72.8 124 43.5
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.7e-11 72.8 163 37.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.5e-11 72.4 74 55.4
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.5e-11 72.4 89 50.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.5e-11 72.4 75 53.3
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.5e-11 72.4 134 41.8
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.5e-11 72.4 177 40.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.8e-11 71.2 72 55.6
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.0e-10 70.9 74 55.4
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.3e-10 70.5 131 41.2
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.7e-10 70.1 126 42.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.3e-10 69.7 137 38.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.9e-10 69.3 71 53.5
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.8e-10 68.9 162 38.9
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.8e-10 68.9 145 36.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 3.8e-10 68.9 116 40.5
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.0e-10 68.6 137 43.8
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 5.0e-10 68.6 75 52.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-09 67.4 138 41.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.1e-09 67.4 140 33.6
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.5e-09 67.0 172 34.3
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.5e-09 67.0 86 44.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.9e-09 66.6 67 55.2
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.9e-09 66.6 116 40.5
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.9e-09 66.6 120 40.8
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.5e-09 66.2 123 44.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 2.5e-09 66.2 87 47.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.5e-09 66.2 147 35.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.3e-09 64.7 82 42.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 7.3e-09 64.7 123 46.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 7.3e-09 64.7 123 46.3
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.2e-08 63.9 83 50.6
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.6e-08 63.5 90 48.9
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.1e-08 63.2 115 41.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.8e-08 62.8 102 40.2
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 3.6e-08 62.4 89 40.4
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.7e-08 62.0 79 48.1
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.0e-08 61.2 88 43.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 8.0e-08 61.2 76 50.0
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.4e-07 60.5 71 52.1
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.8e-07 60.1 102 45.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 3.0e-07 59.3 134 42.5
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.2e-07 58.5 156 34.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 5.2e-07 58.5 86 44.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.5e-06 57.0 116 38.8
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.5e-06 57.0 81 43.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.0e-06 56.6 100 42.0
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.6e-06 56.2 78 44.9
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.6e-06 56.2 81 45.7
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.6e-06 56.2 163 31.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.4e-06 55.8 82 46.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 4.4e-06 55.5 166 33.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 9.8e-06 54.3 124 41.1


User provided reference genes

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