Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.5e-77 292.7 331 100.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.9e-69 265.4 331 95.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.0e-60 238.0 331 90.6
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.7e-58 229.9 329 90.9
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.7e-55 220.7 331 88.8
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.0e-48 197.2 319 85.0
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.7e-47 193.0 315 85.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.1e-46 191.4 253 84.6
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 4.1e-46 189.5 318 84.9
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.6e-45 186.0 331 82.5
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 5.9e-45 185.7 331 82.5
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.9e-45 185.7 324 83.0
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.9e-45 185.7 320 83.4
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.7e-44 184.1 321 82.9
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.0e-44 183.3 321 83.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.5e-43 181.0 327 82.9
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.9e-43 180.6 320 83.4
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 7.3e-43 178.7 110 79.1
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.5e-43 178.3 318 83.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.6e-42 177.6 327 83.5
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.1e-42 177.2 327 83.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.1e-42 177.2 331 81.3
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.1e-42 177.2 327 82.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.1e-42 177.2 329 82.1
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.1e-42 177.2 332 74.7
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.1e-42 177.2 305 85.9
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.1e-42 177.2 331 82.8
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.1e-42 177.2 325 82.5
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.8e-42 176.8 314 84.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.8e-42 176.8 318 82.7
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.8e-42 176.8 323 82.7
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.6e-42 176.4 327 82.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.6e-42 176.4 326 81.6
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.6e-42 176.4 328 82.6
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.7e-42 176.0 318 84.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.7e-42 176.0 318 84.9
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 6.2e-42 175.6 323 82.7
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 6.2e-42 175.6 326 81.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.0e-42 175.3 331 80.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.0e-41 174.9 322 83.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.0e-41 174.9 318 83.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.0e-41 174.9 323 82.4
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.4e-41 174.5 235 84.7
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.8e-41 174.1 321 83.2
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.8e-41 174.1 331 80.7
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.3e-41 173.7 329 82.1
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.1e-41 173.3 325 82.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.0e-41 172.9 323 82.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.0e-41 172.9 324 82.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.0e-41 172.9 322 83.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.2e-41 172.6 321 82.9
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 5.2e-41 172.6 322 82.3
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.2e-41 172.6 332 81.9
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.8e-41 172.2 331 80.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 8.9e-41 171.8 326 81.6
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 8.9e-41 171.8 334 80.5
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.9e-41 171.8 332 81.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 8.9e-41 171.8 322 83.5
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 8.9e-41 171.8 322 83.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.2e-40 171.4 325 81.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-40 171.0 329 81.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 2.0e-40 170.6 331 81.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 2.0e-40 170.6 331 81.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.0e-40 170.6 316 83.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-40 170.6 325 80.3
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.6e-40 170.2 318 82.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.6e-40 170.2 349 59.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 4.4e-40 169.5 322 82.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.4e-40 169.5 318 81.4
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 4.4e-40 169.5 325 80.9
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.4e-40 169.5 328 81.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 5.8e-40 169.1 324 81.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 5.8e-40 169.1 330 80.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 5.8e-40 169.1 325 81.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.8e-40 169.1 331 79.8
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.5e-40 168.7 312 83.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.5e-40 168.7 313 84.3
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 7.5e-40 168.7 312 79.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 9.8e-40 168.3 329 81.5
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.3e-39 167.9 318 83.3
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.3e-39 167.9 327 71.3
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.3e-39 167.9 313 84.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.7e-39 167.5 323 82.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.7e-39 167.5 252 79.8
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.7e-39 166.4 323 83.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 3.7e-39 166.4 328 82.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.9e-39 166.0 341 55.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.9e-39 166.0 318 82.7
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.4e-39 165.6 318 82.7
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.3e-39 165.2 318 82.7
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.3e-39 165.2 313 71.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.1e-38 164.9 333 80.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.4e-38 164.5 318 83.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.4e-38 164.5 368 60.6
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.4e-38 164.5 324 81.8
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.9e-38 164.1 325 81.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.9e-38 164.1 329 80.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.2e-38 163.3 328 79.3
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.2e-38 163.3 318 82.4
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.1e-38 162.9 326 81.3
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.1e-38 162.9 318 82.7
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 4.1e-38 162.9 253 78.3
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 5.4e-38 162.5 334 68.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 7.0e-38 162.2 315 81.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.2e-38 161.8 316 82.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-37 161.4 318 82.1
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.0e-37 160.6 296 85.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.7e-37 160.2 318 81.4
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.7e-37 160.2 318 81.4
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.7e-37 160.2 324 79.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.7e-37 160.2 314 82.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 7.8e-37 158.7 297 84.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-36 157.5 337 67.1
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.3e-36 157.1 321 80.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.3e-36 157.1 248 62.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.9e-36 156.4 322 81.1
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.6e-36 155.6 330 79.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.1e-35 154.8 318 80.8
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-35 154.5 236 78.8
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.5e-35 154.5 236 78.8
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.3e-35 153.3 318 80.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.3e-35 152.9 314 82.2
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 5.6e-35 152.5 318 80.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.6e-35 152.5 314 79.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 9.5e-35 151.8 353 76.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.1e-34 150.6 241 80.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 4.7e-34 149.4 97 71.1
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.7e-34 149.4 106 70.8
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.1e-33 148.3 85 78.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-33 147.5 353 68.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 3.1e-33 146.7 107 65.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.1e-33 146.7 94 72.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 3.1e-33 146.7 101 69.3
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 5.2e-33 146.0 326 78.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 5.2e-33 146.0 334 76.3
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-32 144.4 325 72.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-32 144.4 325 72.9
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.0e-32 144.1 91 71.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.4e-32 143.3 94 71.3
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 4.4e-32 142.9 325 79.7
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 4.4e-32 142.9 91 72.5
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 5.8e-32 142.5 93 72.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.5e-32 142.1 323 65.3
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 7.5e-32 142.1 110 62.7
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.7e-31 141.0 91 72.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-31 141.0 95 71.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.7e-31 141.0 104 63.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.7e-31 139.8 101 69.3
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.7e-31 139.8 96 67.7
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.1e-30 138.3 222 82.9
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-30 137.9 98 70.4
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-30 137.9 98 70.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 7.1e-30 135.6 236 78.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 9.2e-30 135.2 93 67.7
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.1e-28 129.4 99 66.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.1e-28 129.4 93 67.7
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.7e-26 122.9 78 73.1
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.7e-23 114.4 244 71.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.7e-20 104.4 66 74.2
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.0e-20 103.6 276 77.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.9e-20 103.2 227 73.1
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.4e-17 94.7 78 59.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.4e-17 94.0 68 64.7
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.7e-13 80.5 65 53.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-12 78.6 50 64.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.1e-12 76.3 65 52.3
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-11 74.7 118 82.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-11 74.7 119 48.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.6e-10 70.1 79 45.6
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 4.8e-10 69.7 246 67.1
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 3.1e-09 67.0 49 71.4
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 4.0e-09 66.6 67 49.3
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 9.0e-09 65.5 43 72.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-08 64.3 180 82.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.7e-07 61.2 43 67.4
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.4e-06 58.2 43 65.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.9e-06 57.8 97 40.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 9.3e-06 55.5 37 70.3


User provided reference genes

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