Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.6e-187 660.6 833 100.0
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 4.9e-128 463.0 278 84.9
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 1.1e-127 461.8 301 78.4
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 6.6e-125 452.6 279 81.4
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 2.9e-120 437.2 304 71.7
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 5.0e-117 426.4 276 77.5
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 6.4e-112 409.5 276 75.7
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.1e-111 408.7 281 75.1
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.1e-111 408.7 281 75.4
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 6.0e-110 402.9 276 74.3
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 5.8e-105 386.3 276 71.7
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 1.0e-101 375.6 280 69.3
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 5.1e-77 293.5 291 52.9
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 2.5e-76 291.2 304 52.6
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 4.8e-75 287.0 291 52.6
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 1.8e-74 285.0 301 51.8
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 5.3e-74 283.5 301 51.5
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 3.8e-72 277.3 290 50.0
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 3.2e-71 274.2 274 53.3
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 6.0e-70 270.0 303 47.5
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 1.0e-69 269.2 292 48.3
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 1.0e-69 269.2 291 50.2
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 5.1e-69 266.9 288 48.3
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 5.1e-69 266.9 289 48.1
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 2.5e-68 264.6 303 46.2
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 4.3e-68 263.8 290 49.0
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 3.1e-66 257.7 298 47.7
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 2.6e-65 254.6 286 47.2
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 5.8e-65 253.4 289 47.4
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.8e-64 250.8 293 46.1
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 6.5e-64 250.0 293 46.1
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 1.9e-63 248.4 126 96.8
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 3.2e-63 247.7 292 47.6
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.7e-62 244.6 293 45.4
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 7.9e-62 243.0 293 45.1
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 5.7e-60 236.9 310 44.2
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 5.7e-60 236.9 155 80.0
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.3e-59 235.7 303 44.6
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 1.3e-59 235.7 287 43.9
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 4.8e-59 233.8 296 45.3
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 3.1e-58 231.1 250 47.2
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 5.3e-58 230.3 287 44.6
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.4e-57 227.6 290 44.5
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 1.3e-56 225.7 291 40.9
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 8.5e-56 223.0 303 44.2
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 1.9e-55 221.9 310 42.3
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 9.4e-55 219.5 292 42.5
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.1e-52 212.6 250 46.0
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 2.5e-52 211.5 312 40.1
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.7e-51 208.8 250 45.2
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.7e-51 208.8 213 50.2
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 8.2e-51 206.5 297 40.4
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 2.0e-49 201.8 111 87.4
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 1.0e-48 199.5 267 42.3
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 5.0e-48 197.2 260 43.5
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.2e-46 192.6 119 81.5
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 7.9e-46 189.9 302 37.7
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 4.4e-44 184.1 218 45.4
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 7.4e-44 183.3 254 40.2
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.7e-43 182.2 253 41.5
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 3.5e-41 174.5 190 46.3
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 1.2e-38 166.0 193 45.6
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 6.1e-38 163.7 276 37.3
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 6.1e-38 163.7 153 54.2
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 3.9e-37 161.0 268 39.2
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 2.6e-36 158.3 169 45.6
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 5.7e-36 157.1 116 71.6
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 5.7e-36 157.1 208 40.9
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 3.8e-32 144.4 191 38.7
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.5e-31 142.5 126 58.7
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 2.3e-29 135.2 119 53.8
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 6.7e-29 133.7 152 48.0
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 2.8e-27 128.3 119 53.8
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 1.8e-26 125.6 145 42.1
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 5.3e-26 124.0 119 47.9
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.0e-24 119.8 119 48.7
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.1e-23 116.3 119 47.9
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 1.5e-23 115.9 159 37.1
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 7.2e-23 113.6 182 40.1
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 1.2e-22 112.8 186 34.9
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 1.7e-19 102.4 178 32.0
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.6e-17 95.9 144 37.5
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 4.7e-14 84.3 95 45.3
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 2.6e-12 78.6 211 27.5
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 4.4e-12 77.8 200 27.0
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.4e-12 77.8 199 27.1
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 9.8e-12 76.6 199 27.1
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.4e-10 72.8 199 26.1
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 1.4e-10 72.8 284 24.3
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.4e-10 72.0 223 26.0
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 9.2e-10 70.1 199 25.1
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 1.2e-09 69.7 199 25.6
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 2.7e-09 68.6 186 24.7
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 7.8e-09 67.0 199 24.1
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.7e-08 65.9 221 23.5
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.7e-08 65.9 165 26.7
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.7e-08 65.9 219 23.7
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 2.9e-08 65.1 146 27.4
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.0e-08 64.3 162 26.5
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 6.6e-08 63.9 177 27.7
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 6.6e-08 63.9 162 27.2
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 6.6e-08 63.9 194 23.7
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 8.6e-08 63.5 162 25.9
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 1.5e-07 62.8 171 24.6
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 1.5e-07 62.8 175 25.7
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 1.5e-07 62.8 194 23.7
Solyc05g051340.3 Solanum lycopersicum HOM05D007291 ORTHO05D009038 1.5e-07 62.8 208 22.6
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 2.5e-07 62.0 78 39.7
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 4.3e-07 61.2 197 22.8
arahy.Tifrunner.gnm1.ann1.6HP7HZ Arachis hypogaea HOM05D002890 ORTHO05D009847 5.6e-07 60.8 189 24.3
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 7.3e-07 60.5 219 22.4
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 9.5e-07 60.1 153 26.8
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 9.5e-07 60.1 284 22.2
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 9.5e-07 60.1 199 23.6
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 1.2e-06 59.7 207 23.7
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 2.8e-06 58.5 181 23.2
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.8e-06 58.5 179 24.0
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 2.8e-06 58.5 181 23.2
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.8e-06 58.5 188 24.5
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 2.8e-06 58.5 210 21.9
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 2.8e-06 58.5 186 25.3
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.8e-06 58.5 270 24.4
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 3.6e-06 58.2 220 20.5
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 4.7e-06 57.8 181 24.3
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 4.7e-06 57.8 163 25.2
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 4.7e-06 57.8 147 24.5
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 4.7e-06 57.8 147 24.5
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 6.1e-06 57.4 149 28.9
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 6.1e-06 57.4 154 28.6
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 8.0e-06 57.0 254 22.0


User provided reference genes

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