Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.2e-112 407.9 232 100.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.0e-87 326.2 214 79.0
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.4e-79 298.5 224 83.9
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.6e-75 284.3 229 68.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.3e-74 282.0 224 73.2
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.1e-68 263.1 222 68.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.3e-66 255.8 224 62.1
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.8e-63 245.0 223 62.3
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.8e-62 242.3 226 61.5
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.1e-53 214.2 233 55.8
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 6.6e-51 204.9 202 59.4
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 6.6e-51 204.9 202 59.4
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 1.4e-48 197.2 225 56.9
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 1.5e-47 193.7 222 55.4
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-47 193.4 225 56.4
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 5.8e-47 191.8 221 55.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.2e-45 185.7 228 55.3
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-43 181.0 225 50.2
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 4.0e-40 169.1 226 48.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.8e-30 136.0 223 44.8
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 4.9e-30 135.6 216 43.5
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.5e-30 135.2 228 42.1
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 7.1e-29 131.7 148 54.7
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-28 130.6 148 55.4
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-28 130.6 148 55.4
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.6e-28 130.6 148 55.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.0e-27 127.9 212 42.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.0e-27 127.9 143 53.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.3e-27 127.5 213 42.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.8e-27 127.1 147 53.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.9e-27 125.9 222 41.9
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.9e-27 125.9 212 42.5
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 5.1e-27 125.6 230 44.3
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.1e-26 124.4 217 40.1
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.5e-26 124.0 142 52.8
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.9e-26 123.6 229 44.5
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-26 123.2 204 41.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 2.5e-26 123.2 229 44.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.3e-26 122.9 142 52.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.3e-26 122.9 148 51.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.3e-26 122.9 148 51.4
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.3e-26 122.9 123 56.1
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.3e-26 122.5 159 47.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 5.7e-26 122.1 228 38.2
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 7.4e-26 121.7 221 40.3
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 9.7e-26 121.3 240 37.9
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.6e-25 120.6 144 50.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-25 120.6 148 50.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 1.6e-25 120.6 166 47.6
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.6e-25 120.6 151 52.3
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.6e-25 120.6 151 51.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 6.3e-25 118.6 153 48.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 8.2e-25 118.2 111 60.4
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.1e-24 117.9 223 38.6
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.4e-24 117.5 226 38.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.4e-24 117.5 147 51.7
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.8e-24 117.1 209 40.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.4e-24 116.7 137 54.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 3.1e-24 116.3 165 47.3
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 5.3e-24 115.5 220 38.6
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.9e-24 115.2 137 52.6
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.9e-24 115.2 149 49.0
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 9.0e-24 114.8 143 49.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.2e-23 114.4 201 41.3
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.0e-23 113.6 108 56.5
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 2.6e-23 113.2 155 49.0
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-23 112.5 204 41.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.6e-23 111.7 224 39.3
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 7.6e-23 111.7 219 40.2
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.6e-23 111.7 229 40.2
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 7.6e-23 111.7 222 43.7
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.0e-22 111.3 160 47.5
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.0e-22 111.3 109 56.0
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.3e-22 110.9 150 48.7
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.3e-22 110.9 134 49.3
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.3e-22 110.9 154 47.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.7e-22 110.5 149 49.7
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.2e-22 110.2 141 52.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.2e-22 110.2 209 39.7
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.8e-22 109.4 145 48.3
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.0e-22 109.0 243 40.7
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 8.5e-22 108.2 107 57.0
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 8.5e-22 108.2 251 37.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.1e-21 107.8 141 52.5
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.4e-21 107.5 163 44.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.4e-21 107.5 142 51.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-21 107.5 146 47.3
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.4e-21 107.5 151 45.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.4e-21 107.5 142 49.3
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.9e-21 107.1 105 60.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.5e-21 106.7 228 37.3
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.5e-21 106.7 233 34.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.5e-21 106.7 92 62.0
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 3.2e-21 106.3 248 38.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.2e-21 105.9 93 58.1
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 5.5e-21 105.5 147 48.3
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 9.4e-21 104.8 173 43.9
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.6e-20 104.0 112 50.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.6e-20 104.0 158 48.7
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.1e-20 103.6 253 36.4
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 4.6e-20 102.4 157 45.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 7.9e-20 101.7 144 47.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.0e-19 101.3 170 43.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.0e-19 101.3 161 44.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.4e-19 100.9 117 49.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.4e-19 100.9 113 55.8
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.0e-19 99.8 172 40.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.1e-19 99.0 194 36.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.1e-19 99.0 178 39.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.1e-18 97.8 159 44.0
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.4e-18 95.1 195 40.5
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.4e-18 95.1 176 40.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.7e-18 94.7 188 39.9
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.7e-18 94.7 188 39.9
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.7e-17 94.0 108 50.0
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.2e-17 93.6 97 56.7
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 8.2e-17 91.7 131 44.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 8.2e-17 91.7 180 38.9
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.1e-16 91.3 236 35.2
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-16 91.3 143 44.1
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-16 90.9 192 39.6
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.8e-16 90.5 96 53.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 5.3e-16 89.0 95 54.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.3e-16 89.0 92 51.1
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.3e-16 89.0 92 51.1
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 5.3e-16 89.0 99 53.5
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 6.9e-16 88.6 91 57.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.2e-15 87.8 237 33.8
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 4.5e-15 85.9 46 87.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.0e-14 84.7 80 61.2
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 6.5e-14 82.0 164 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.1e-10 71.2 61 59.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.6e-10 70.1 50 64.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.6e-10 70.1 50 64.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.3e-10 69.7 59 55.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.7e-10 68.2 49 61.2
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.8e-09 65.9 50 58.0
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-08 64.7 39 71.8
Aqoxy3G00245 Aquilegia oxysepala HOM05D001250 ORTHO05D000627 7.0e-08 62.0 80 40.0
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 7.0e-08 62.0 39 69.2
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.6e-07 60.1 126 37.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 7.7e-07 58.5 213 33.3
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 1.7e-06 57.4 41 61.0
Medtr2g067740 Medicago truncatula HOM05D000333 ORTHO05D000190 3.8e-06 56.2 66 42.4
Medtr3g011970 Medicago truncatula HOM05D000333 ORTHO05D000190 3.8e-06 56.2 108 36.1
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 5.0e-06 55.8 65 44.6
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 8.5e-06 55.1 86 45.3


User provided reference genes

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