Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.5e-299 1032.3 606 100.0
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.6e-259 897.5 610 87.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.5e-243 845.5 610 84.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.3e-239 833.2 612 85.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.9e-238 829.3 613 77.8
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.6e-237 826.2 611 79.7
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.6e-208 729.2 616 72.2
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.9e-207 725.7 611 74.6
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.2e-205 720.3 626 72.0
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.0e-203 713.0 606 71.9
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 8.2e-202 707.6 612 71.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 4.1e-201 705.3 636 70.1
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-198 697.2 604 70.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.1e-198 697.2 604 70.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.2e-198 695.3 612 74.8
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.2e-195 687.2 605 69.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.3e-170 604.0 637 58.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 9.2e-161 571.2 522 75.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 3.0e-103 380.2 425 55.8
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.0e-102 377.5 673 42.8
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.2e-98 364.0 622 39.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.8e-98 363.2 644 39.3
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.2e-97 360.1 651 38.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.5e-97 359.4 654 40.2
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.1e-96 357.5 645 38.4
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.1e-96 355.9 660 38.5
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 8.8e-95 352.1 715 42.9
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.5e-94 351.3 643 39.3
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.0e-94 350.9 618 38.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 4.4e-94 349.7 621 40.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.8e-93 347.1 642 38.3
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.7e-93 346.7 666 38.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-92 345.1 670 37.8
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.0e-92 342.4 649 39.1
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 5.0e-90 336.3 621 43.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.5e-90 335.5 680 37.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 8.5e-90 335.5 650 40.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.5e-89 334.7 650 38.2
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.4e-89 332.0 710 37.2
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.6e-88 331.3 645 38.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.1e-88 330.9 644 40.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.0e-88 328.9 664 36.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 8.8e-87 325.5 658 37.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 9.7e-86 322.0 701 36.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.7e-85 321.2 662 38.4
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-85 321.2 669 36.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 8.2e-85 318.9 677 36.0
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-84 317.4 678 35.4
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.3e-84 316.2 690 36.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-83 315.1 654 37.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.5e-83 313.5 356 64.9
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.7e-82 311.2 668 35.9
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.2e-82 310.8 356 64.6
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.2e-82 310.8 625 37.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.2e-82 310.8 665 38.9
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 6.5e-82 309.3 702 35.9
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.5e-81 308.1 569 38.7
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.9e-81 307.8 699 36.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.9e-81 307.8 697 35.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.9e-81 307.8 699 35.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.2e-81 306.6 699 36.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-80 305.1 677 36.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.1e-80 304.3 707 36.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 4.7e-80 303.1 709 36.1
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.1e-80 302.8 624 36.7
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.4e-79 301.6 650 37.2
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.0e-79 300.4 634 36.9
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.0e-78 297.7 687 42.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.7e-78 296.2 689 36.1
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.2e-77 294.3 654 35.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 4.1e-76 290.0 699 34.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.0e-75 287.7 342 62.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.8e-74 283.5 686 34.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.2e-73 280.4 714 34.5
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.6e-72 278.1 645 35.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.7e-72 277.3 601 35.6
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.7e-72 277.3 670 34.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.6e-72 276.9 645 34.7
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 5.2e-71 273.1 779 31.1
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.2e-70 271.9 643 34.8
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.0e-70 271.2 680 32.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.7e-69 266.9 675 37.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.4e-68 265.0 796 36.9
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 2.4e-68 264.2 634 37.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.4e-68 263.1 834 30.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-68 262.7 649 35.6
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-67 261.9 653 36.4
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.0e-66 258.8 671 39.2
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.0e-66 258.8 833 31.1
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.3e-65 253.4 635 35.7
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.3e-65 252.7 703 34.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.2e-64 251.9 657 35.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.6e-64 250.4 706 35.3
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 4.7e-64 250.0 385 44.9
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.8e-63 248.1 323 51.7
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.2e-63 246.5 707 34.9
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.2e-63 246.5 746 30.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.8e-63 246.1 859 31.9
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 6.8e-63 246.1 790 29.1
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.2e-62 245.4 797 30.5
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 5.7e-62 243.0 419 42.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 9.8e-62 242.3 323 49.8
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.7e-61 240.4 580 34.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 6.4e-61 239.6 406 41.1
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.1e-60 238.8 655 33.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.1e-60 238.8 729 31.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 9.2e-60 235.7 733 31.9
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.3e-58 231.1 607 32.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.0e-58 229.9 566 32.9
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 8.6e-58 229.2 599 34.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 7.3e-57 226.1 698 32.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.3e-55 221.1 768 28.9
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.9e-53 214.2 599 35.1
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.2e-51 208.8 668 32.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.7e-51 207.6 653 30.3
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.8e-51 206.1 608 35.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-50 205.7 688 29.4
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.3e-49 200.7 896 29.7
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 5.6e-49 199.9 665 30.1
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.9e-45 187.6 603 29.4
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 3.0e-42 177.6 579 36.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.1e-41 175.6 666 30.8
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 9.5e-41 172.6 597 30.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.6e-40 170.6 396 33.3
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.8e-39 166.4 594 29.1
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.3e-37 162.2 438 32.9
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 8.4e-37 159.5 218 44.5
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 4.1e-36 157.1 607 29.0
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-34 151.4 333 37.8
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 4.3e-33 147.1 278 41.0
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 2.8e-32 144.4 264 42.8
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.4e-29 133.3 140 50.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 3.2e-28 131.0 139 49.6
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.2e-28 131.0 233 37.8
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 5.4e-28 130.2 288 35.8
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 6.0e-27 126.7 622 27.3
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.0e-26 125.9 619 28.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.6e-26 123.2 594 28.1
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-25 122.5 159 44.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.5e-25 121.3 292 33.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.5e-25 121.3 732 24.0
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 1.6e-24 118.6 563 28.1
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.4e-23 114.8 508 26.8
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 4.0e-23 114.0 79 78.5
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.3e-23 113.6 719 23.9
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.5e-22 112.1 335 31.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 4.9e-21 107.1 142 44.4
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.2e-20 104.0 115 47.8
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.2e-19 102.4 610 25.9
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.5e-19 100.9 147 36.7
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 6.7e-18 96.7 323 34.4
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.0e-15 87.4 525 25.1
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 5.8e-14 83.6 321 29.0
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.8e-13 80.9 85 45.9
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.9e-13 80.5 505 25.9
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.4e-13 80.1 79 54.4
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-12 79.0 172 36.6
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.9e-12 78.6 142 39.4
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-11 75.5 115 40.0
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-10 72.8 88 45.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-10 71.6 88 45.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-10 70.5 75 46.7
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.7e-10 70.1 89 42.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 3.3e-09 67.8 83 42.2
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 4.3e-09 67.4 88 42.0
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 8.2e-08 63.2 60 51.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.4e-07 62.4 64 48.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 9.0e-07 59.7 101 41.6


User provided reference genes

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