Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 2.4e-198 695.3 344 100.0
AL1G24200 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 8.9e-68 261.5 171 72.5
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.9e-52 208.4 137 75.2
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 2.6e-19 100.5 185 35.7
AL1G36940 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 1.7e-18 97.8 179 35.2
AL1G36880 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 3.5e-16 90.1 175 34.3
AL1G37000 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 7.9e-16 89.0 175 33.7
AT1G23201 Arabidopsis thaliana HOM05D014944 ORTHO05D017385 4.8e-13 79.7 173 30.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.1e-12 78.6 142 39.4
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 2.9e-10 70.5 185 30.3
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 3.8e-10 70.1 167 31.1
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 6.5e-10 69.3 189 31.7
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 8.4e-10 68.9 50 70.0
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 5.5e-09 66.2 157 33.1
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.6e-08 64.7 85 43.5
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 2.1e-08 64.3 170 30.6
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 3.5e-08 63.5 87 42.5
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 4.6e-08 63.2 118 38.1
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 4.6e-08 63.2 118 38.1
AL1G30590 Arabidopsis lyrata HOM05D014411 ORTHO05D015382 6.0e-08 62.8 108 36.1
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 7.9e-08 62.4 88 40.9
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 7.9e-08 62.4 86 40.7
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 1.3e-07 61.6 95 37.9
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.3e-07 61.6 79 43.0
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.3e-07 61.6 63 47.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.8e-07 61.2 96 38.5
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 2.3e-07 60.8 63 49.2
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 3.0e-07 60.5 70 50.0
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.9e-07 60.1 87 42.5
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 3.9e-07 60.1 91 39.6
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 3.9e-07 60.1 91 39.6
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 3.9e-07 60.1 106 34.9
AL1G24370 Arabidopsis lyrata HOM05D011464 ORTHO05D014025 5.1e-07 59.7 86 44.2
CARHR011770 Cardamine hirsuta HOM05D014411 ORTHO05D015382 5.1e-07 59.7 82 45.1
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 5.1e-07 59.7 63 47.6
AagrBONN_evm.TU.Sc2ySwM_362.2762 Anthoceros agrestis HOM05D003532 ORTHO05D003298 6.7e-07 59.3 140 30.0
AL7G35910 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 8.7e-07 58.9 118 32.2
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 8.7e-07 58.9 62 46.8
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 8.7e-07 58.9 62 46.8
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.1e-06 58.5 62 46.8
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.1e-06 58.5 79 40.5
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.1e-06 58.5 63 46.0
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.1e-06 58.5 62 48.4
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.1e-06 58.5 85 40.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 1.5e-06 58.2 77 42.9
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 1.5e-06 58.2 90 42.2
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.5e-06 58.2 91 36.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.5e-06 58.2 63 46.0
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.5e-06 58.2 87 42.5
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.9e-06 57.8 113 32.7
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.9e-06 57.8 88 39.8
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.9e-06 57.8 89 39.3
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.9e-06 57.8 80 42.5
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.9e-06 57.8 87 35.6
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 2.5e-06 57.4 76 40.8
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 2.5e-06 57.4 92 37.0
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 2.5e-06 57.4 81 37.0
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 2.5e-06 57.4 88 39.8
Cpa.g.sc370.5 Carica papaya HOM05D001326 ORTHO05D002471 3.3e-06 57.0 89 37.1
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 3.3e-06 57.0 29 93.1
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.3e-06 57.0 74 43.2
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 4.3e-06 56.6 71 43.7
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 4.3e-06 56.6 83 39.8
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 5.7e-06 56.2 81 42.0
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 5.7e-06 56.2 99 36.4
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 5.7e-06 56.2 114 36.0
A06p12400 Brassica napus HOM05D013370 ORTHO05D016580 5.7e-06 56.2 66 43.9
C05p14670 Brassica napus HOM05D013370 ORTHO05D016580 5.7e-06 56.2 66 43.9
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 5.7e-06 56.2 114 36.0
BraA06t24403Z Brassica rapa HOM05D013370 ORTHO05D016580 5.7e-06 56.2 66 43.9
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 5.7e-06 56.2 63 44.4
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 5.7e-06 56.2 70 47.1
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 5.7e-06 56.2 63 42.9
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 5.7e-06 56.2 108 32.4
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 5.7e-06 56.2 86 41.9
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 5.7e-06 56.2 63 47.6
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 5.7e-06 56.2 79 40.5
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 5.7e-06 56.2 78 41.0
AL1G36930 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 7.4e-06 55.8 118 31.4
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 7.4e-06 55.8 63 44.4
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 7.4e-06 55.8 75 40.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 7.4e-06 55.8 28 96.4
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 7.4e-06 55.8 63 42.9
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 7.4e-06 55.8 63 44.4
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 7.4e-06 55.8 54 50.0
Actinidia36982 Actinidia chinensis HOM05D001326 ORTHO05D002471 9.6e-06 55.5 104 29.8
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 9.6e-06 55.5 119 33.6
BcaC05g25568 Brassica carinata HOM05D013370 ORTHO05D016580 9.6e-06 55.5 66 40.9
CARHR018730 Cardamine hirsuta HOM05D013370 ORTHO05D015382 9.6e-06 55.5 88 42.0
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 9.6e-06 55.5 63 46.0
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 9.6e-06 55.5 63 46.0
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 9.6e-06 55.5 98 39.8
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 9.6e-06 55.5 83 39.8
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 9.6e-06 55.5 83 39.8
Potri.002G052900 Populus trichocarpa HOM05D001326 ORTHO05D002471 9.6e-06 55.5 89 36.0


User provided reference genes

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