Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 1.3e-160 569.7 284 100.0
AL1G24720 Arabidopsis lyrata HOM05D009074 ORTHO05D023607 1.0e-122 443.7 224 99.6
AL1G24010 Arabidopsis lyrata HOM05D009074 ORTHO05D023607 1.1e-68 264.2 165 84.2
AL1G24050 Arabidopsis lyrata HOM05D009074 ORTHO05D023607 4.3e-68 262.3 152 88.8
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 4.2e-23 112.8 59 89.8
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 7.2e-23 112.1 59 88.1
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 7.2e-23 112.1 59 86.4
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.0e-21 108.2 59 86.4
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-21 107.8 59 84.7
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 1.4e-21 107.8 59 84.7
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 3.9e-21 106.3 59 84.7
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 3.9e-21 106.3 59 84.7
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.1e-20 104.8 59 79.7
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.5e-20 104.4 59 83.1
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 3.3e-20 103.2 59 81.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 4.1e-18 96.3 59 71.2
AL1G22560 Arabidopsis lyrata HOM05D009074 ORTHO05D011606 5.3e-18 95.9 196 35.2
AL1G43120 Arabidopsis lyrata HOM05D009074 ORTHO05D011606 1.2e-17 94.7 188 31.4
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.5e-17 94.4 59 67.8
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.0e-17 94.0 56 71.4
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 2.6e-17 93.6 59 67.8
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 3.4e-17 93.2 67 64.2
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 3.4e-17 93.2 59 69.5
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 3.4e-17 93.2 59 69.5
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 7.7e-17 92.0 56 73.2
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 7.7e-17 92.0 59 69.5
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-16 91.7 80 53.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-16 91.3 59 64.4
AL1G43110 Arabidopsis lyrata HOM05D009074 ORTHO05D011606 1.7e-16 90.9 188 30.9
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.7e-16 90.9 59 62.7
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.2e-16 90.5 58 69.0
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 5.0e-16 89.4 59 67.8
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 5.0e-16 89.4 59 64.4
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 5.0e-16 89.4 59 66.1
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 6.5e-16 89.0 59 62.7
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 6.5e-16 89.0 78 53.8
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 6.5e-16 89.0 59 62.7
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 6.5e-16 89.0 59 67.8
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.5e-16 88.6 59 62.7
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.5e-16 88.6 59 62.7
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.5e-16 88.6 59 62.7
C06p10420 Brassica napus HOM05D009074 ORTHO05D011606 1.1e-15 88.2 98 39.8
BolC6t36119H Brassica oleracea HOM05D009074 ORTHO05D011606 1.1e-15 88.2 98 39.8
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.4e-15 87.8 59 62.7
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.4e-15 87.8 59 62.7
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.9e-15 87.4 59 67.8
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 2.5e-15 87.0 59 62.7
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.5e-15 87.0 59 62.7
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.5e-15 87.0 59 66.1
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.5e-15 87.0 59 66.1
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.5e-15 87.0 59 62.7
BcaC08g43626 Brassica carinata HOM05D009074 ORTHO05D011606 3.2e-15 86.7 94 40.4
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 3.2e-15 86.7 59 61.0
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 3.2e-15 86.7 59 59.3
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 3.2e-15 86.7 59 61.0
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 3.2e-15 86.7 59 62.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 3.2e-15 86.7 59 61.0
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 4.2e-15 86.3 59 64.4
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 7.2e-15 85.5 59 62.7
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 7.2e-15 85.5 59 62.7
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 7.2e-15 85.5 59 62.7
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 9.4e-15 85.1 59 62.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 9.4e-15 85.1 59 57.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 9.4e-15 85.1 59 62.7
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.2e-14 84.7 59 64.4
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.6e-14 84.3 59 62.7
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.6e-14 84.3 59 62.7
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.6e-14 84.3 59 62.7
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.1e-14 84.0 59 59.3
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 2.1e-14 84.0 58 63.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.1e-14 84.0 59 64.4
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 2.1e-14 84.0 59 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 2.7e-14 83.6 66 59.1
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 2.7e-14 83.6 58 62.1
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 2.7e-14 83.6 59 61.0
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 6.1e-14 82.4 58 63.8
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 7.9e-14 82.0 59 59.3
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 7.9e-14 82.0 59 59.3
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 7.9e-14 82.0 56 64.3
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 1.0e-13 81.6 59 59.3
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 1.4e-13 81.3 59 59.3
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.4e-13 81.3 58 60.3
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.4e-13 81.3 54 64.8
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.8e-13 80.9 59 57.6
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 2.3e-13 80.5 58 63.8
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 5.2e-13 79.3 59 55.9
Aa31LG9G11490 Aethionema arabicum HOM05D009074 ORTHO05D011606 6.7e-13 79.0 96 39.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 6.7e-13 79.0 58 58.6
Aa31LG9G11450 Aethionema arabicum HOM05D009074 ORTHO05D011606 8.8e-13 78.6 96 39.6
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 8.8e-13 78.6 59 55.9
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 8.8e-13 78.6 59 55.9
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 1.1e-12 78.2 57 57.9
BcaC05g28233 Brassica carinata HOM05D009074 ORTHO05D032380 1.5e-12 77.8 85 41.2
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 1.5e-12 77.8 85 41.2
BolC5t33016H Brassica oleracea HOM05D009074 ORTHO05D032380 1.5e-12 77.8 85 41.2
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.5e-12 77.8 59 55.9
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.3e-12 76.6 59 59.3
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 3.3e-12 76.6 61 57.4
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 3.3e-12 76.6 59 55.9
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.3e-11 74.7 58 58.6
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 2.2e-11 73.9 48 68.8
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 2.8e-11 73.6 59 55.9
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 3.7e-11 73.2 59 54.2
BcaB08g37341 Brassica carinata HOM05D009074 ORTHO05D011606 4.8e-11 72.8 115 40.0
BolC7t42086H Brassica oleracea HOM05D009074 ORTHO05D011606 6.3e-11 72.4 92 35.9
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 8.2e-11 72.0 58 56.9
BcaC06g35452 Brassica carinata HOM05D009074 ORTHO05D011606 1.4e-10 71.2 74 36.5
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.4e-10 71.2 53 60.4
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 1.8e-10 70.9 59 54.2
C08p49050 Brassica napus HOM05D009074 ORTHO05D011606 4.5e-09 66.2 115 36.5
BraA07t28839Z Brassica rapa HOM05D009074 ORTHO05D011606 4.5e-09 66.2 74 33.8
AL1G22570 Arabidopsis lyrata HOM05D009074 ORTHO05D011606 5.9e-09 65.9 150 32.7
AT1G11470 Arabidopsis thaliana HOM05D009074 ORTHO05D011606 1.7e-08 64.3 84 34.5
AL1G21130 Arabidopsis lyrata HOM05D009074 ORTHO05D011606 2.2e-08 63.9 102 35.3
A09p65110 Brassica napus HOM05D009074 ORTHO05D011606 2.2e-08 63.9 139 28.8
BraA09t41854Z Brassica rapa HOM05D009074 ORTHO05D011606 2.2e-08 63.9 139 28.8
Carub.0002s1843 Capsella rubella HOM05D009074 ORTHO05D011606 3.8e-08 63.2 58 46.6
BcaC05g28234 Brassica carinata HOM05D009074 ORTHO05D032380 1.5e-07 61.2 77 37.7
C07p15930 Brassica napus HOM05D009074 ORTHO05D011606 1.5e-07 61.2 65 41.5
BcaC07g41830 Brassica carinata HOM05D009074 ORTHO05D011606 3.2e-07 60.1 91 36.3


User provided reference genes

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