Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.8e-256 888.6 422 100.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.6e-252 875.5 422 97.9
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 5.3e-248 860.5 422 96.0
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 3.4e-247 857.8 422 95.0
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 1.3e-246 855.9 422 95.3
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 3.9e-243 844.3 422 94.1
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 5.1e-243 844.0 422 94.3
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 9.7e-242 839.7 423 93.4
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 4.8e-233 810.8 405 94.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 2.4e-232 808.5 405 94.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.1e-232 808.1 404 94.3
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 5.3e-232 807.4 404 94.1
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 6.9e-232 807.0 422 88.4
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 4.7e-228 794.3 422 87.2
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 9.1e-216 753.4 417 82.0
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 1.0e-214 750.0 417 81.8
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 5.5e-213 744.2 418 81.3
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.1e-212 742.3 417 80.6
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 4.7e-212 741.1 417 80.6
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.6e-210 735.3 419 80.0
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 3.4e-210 734.9 418 78.7
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.7e-209 732.6 417 78.9
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.2e-209 732.3 418 80.6
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.1e-208 729.9 418 78.7
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 2.4e-208 728.8 416 79.1
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 4.1e-208 728.0 415 80.2
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 7.0e-208 727.2 419 80.2
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 7.0e-208 727.2 417 80.3
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 9.1e-208 726.9 417 79.6
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 9.1e-208 726.9 411 80.8
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.0e-207 725.7 418 78.7
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 2.7e-207 725.3 419 79.5
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-207 724.9 416 79.3
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.0e-206 723.4 415 80.5
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.3e-206 723.0 417 80.3
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.7e-206 722.6 417 79.9
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.7e-206 722.6 417 78.7
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.9e-206 721.8 415 79.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.8e-206 721.5 418 78.0
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 5.0e-206 721.1 415 79.8
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 8.6e-206 720.3 416 77.2
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 8.6e-206 720.3 419 79.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.1e-205 719.9 420 79.3
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.5e-205 719.5 416 79.6
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.5e-205 718.8 416 79.6
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.5e-205 718.8 415 79.5
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 4.2e-205 718.0 450 74.0
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 4.2e-205 718.0 418 77.8
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 5.5e-205 717.6 419 78.0
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 9.5e-205 716.8 416 78.1
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 6.1e-204 714.1 420 76.9
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.4e-203 713.0 417 77.5
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.8e-203 712.6 417 77.0
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 3.0e-203 711.8 419 77.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 5.2e-203 711.1 416 76.2
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 6.8e-203 710.7 415 78.1
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 6.8e-203 710.7 422 74.4
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.6e-202 708.8 415 79.3
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 3.4e-202 708.4 422 74.2
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.4e-202 708.4 459 72.1
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 7.5e-202 707.2 421 75.5
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 7.5e-202 707.2 415 76.4
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 9.8e-202 706.8 420 76.7
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.7e-201 706.1 415 78.8
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 2.2e-201 705.7 421 77.4
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 3.7e-201 704.9 413 79.2
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.7e-201 704.9 415 78.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 6.3e-201 704.1 416 76.7
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 8.3e-201 703.7 419 76.8
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.1e-200 703.4 422 73.5
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.2e-199 699.9 422 73.2
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.6e-199 699.5 422 73.2
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.0e-199 699.1 444 73.9
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.5e-199 698.4 444 73.9
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 4.5e-199 698.0 422 73.7
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.9e-199 697.6 420 74.3
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.3e-198 696.4 419 73.0
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.9e-198 695.3 417 74.8
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 3.8e-198 694.9 422 73.0
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 5.0e-198 694.5 419 73.3
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 6.6e-198 694.1 419 72.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 8.6e-198 693.7 420 76.2
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 8.6e-198 693.7 422 72.5
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.5e-197 693.0 395 81.8
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 2.5e-197 692.2 398 79.9
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 2.5e-197 692.2 425 75.5
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.1e-196 687.6 417 74.8
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.8e-195 686.0 417 74.8
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 8.9e-195 683.7 502 64.9
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 1.5e-194 682.9 418 74.6
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 2.6e-194 682.2 417 74.6
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.3e-193 679.9 419 74.0
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 5.4e-192 674.5 395 77.5
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.3e-190 669.8 429 72.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.0e-190 668.7 410 73.7
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.3e-189 665.2 454 67.2
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 2.1e-188 662.5 417 72.9
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.8e-187 659.4 422 68.2
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 4.0e-187 658.3 435 72.2
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 2.6e-186 655.6 422 67.5
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.4e-186 655.2 423 69.5
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.4e-186 654.8 424 69.3
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 2.9e-185 652.1 406 75.1
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 4.9e-185 651.4 405 73.1
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 5.4e-184 647.9 459 68.2
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 5.6e-181 637.9 427 69.8
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 6.8e-179 630.9 415 71.8
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 8.9e-179 630.6 398 75.1
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 8.9e-179 630.6 419 69.9
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.3e-161 573.5 417 65.7
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.3e-161 573.5 417 64.5
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.9e-161 571.6 420 63.6
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 8.4e-161 570.9 371 72.8
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 8.4e-161 570.9 419 61.6
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.1e-159 566.2 300 83.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.7e-158 563.1 358 69.0
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.6e-156 556.6 416 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 2.8e-156 555.8 419 61.3
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 3.1e-147 525.8 436 62.2
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.9e-144 516.5 360 65.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 6.9e-139 498.0 421 53.7
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 1.1e-128 464.2 275 77.1
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 7.7e-122 441.4 462 52.6
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 2.2e-121 439.9 464 51.7
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.4e-120 437.2 473 47.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.1e-117 427.6 470 46.2
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.3e-108 397.5 426 48.1
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.7e-50 203.8 115 76.5
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 4.9e-36 156.4 89 80.9
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 4.9e-36 156.4 89 80.9
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.5e-32 144.8 97 67.0
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-31 141.7 115 57.4
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 6.9e-30 136.0 104 60.6
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 5.1e-25 119.8 69 82.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 9.6e-24 115.5 69 79.7
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 9.6e-24 115.5 71 74.6
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 4.8e-23 113.2 69 78.3
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-19 101.7 55 76.4
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 4.2e-19 100.1 136 43.4
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.4e-09 68.6 65 52.3
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 8.2e-07 59.3 36 66.7
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.1e-06 57.4 121 30.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.9e-06 56.2 121 32.2
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 9.1e-06 55.8 25 92.0


User provided reference genes

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