Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 7.7e-286 986.5 506 100.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 9.5e-252 873.2 498 89.8
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 8.3e-248 860.1 509 86.2
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.4e-247 858.6 509 85.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 4.4e-241 837.8 509 84.1
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.1e-236 823.2 512 82.8
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-236 822.8 512 83.2
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 1.5e-236 822.8 512 83.2
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 5.6e-236 820.8 512 82.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 3.5e-230 801.6 509 81.1
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 3.5e-230 801.6 509 81.1
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 8.6e-229 797.0 509 81.1
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.1e-226 790.0 509 80.4
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 3.0e-221 771.9 504 80.0
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.0e-205 718.8 511 71.6
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.8e-173 613.2 353 87.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-172 609.8 512 62.3
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.7e-171 606.7 515 61.9
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 6.3e-171 604.7 504 61.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-170 602.8 512 61.5
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 4.5e-169 598.6 513 61.0
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.9e-168 595.9 509 62.3
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 8.5e-168 594.3 506 62.3
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.4e-167 593.6 503 62.0
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.9e-167 593.2 517 61.3
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.6e-166 590.1 517 60.7
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.1e-166 589.7 512 59.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.1e-166 589.7 498 62.2
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 3.6e-166 589.0 508 60.4
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 4.7e-166 588.6 502 61.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.4e-165 587.0 505 61.2
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 5.1e-165 585.1 501 61.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.1e-164 583.9 511 62.4
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.0e-164 583.2 509 60.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.0e-164 583.2 513 58.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.7e-163 578.9 501 60.9
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.8e-162 576.6 510 59.2
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 7.0e-162 574.7 499 60.7
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 5.9e-161 571.6 522 59.0
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 7.7e-161 571.2 503 60.6
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.3e-160 570.5 505 60.8
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-159 567.0 505 59.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.5e-159 566.2 496 60.7
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 4.2e-159 565.5 510 58.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 5.5e-159 565.1 502 59.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.2e-158 563.9 506 59.9
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 6.1e-158 561.6 513 58.5
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.0e-157 560.8 488 61.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.3e-157 559.7 513 58.5
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-156 557.0 498 58.6
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.0e-156 556.6 498 59.4
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.3e-156 555.8 513 57.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 7.5e-156 554.7 513 58.1
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 9.7e-156 554.3 521 57.0
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-155 553.1 513 57.9
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 3.7e-155 552.4 515 57.1
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.8e-154 550.1 506 58.1
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 4.1e-154 548.9 546 55.7
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.6e-153 546.2 497 57.1
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 5.9e-153 545.0 504 57.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 7.7e-153 544.7 507 58.4
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.0e-152 544.3 503 57.7
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.3e-152 543.9 511 56.2
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.3e-152 543.9 511 57.9
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.2e-151 539.3 494 59.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 7.2e-151 538.1 493 56.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.2e-150 537.3 505 57.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 5.2e-149 531.9 516 54.5
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.5e-148 530.4 502 58.2
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.6e-148 529.6 574 51.9
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 3.4e-148 529.3 516 56.0
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 5.7e-148 528.5 501 57.7
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.7e-147 526.9 499 56.9
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.3e-147 524.6 475 57.9
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 9.1e-146 521.2 506 56.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.2e-144 516.5 456 60.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 2.7e-142 509.6 500 56.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 4.7e-142 508.8 456 59.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.4e-140 502.7 500 54.6
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.1e-138 497.7 453 59.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.4e-138 496.5 455 57.1
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 3.1e-138 496.1 446 59.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.5e-137 492.3 488 55.1
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 5.9e-137 491.9 461 57.0
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.0e-136 491.1 493 55.2
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.5e-135 487.3 404 63.4
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-135 486.5 508 54.1
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.8e-134 483.0 505 53.3
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.2e-133 478.8 433 58.7
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.2e-132 477.6 463 54.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.7e-128 463.8 491 53.2
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 4.3e-127 459.1 406 58.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 7.3e-127 458.4 373 63.0
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 4.7e-126 455.7 490 52.9
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.7e-123 447.2 494 52.4
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.4e-114 417.5 250 87.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.2e-113 414.5 405 54.1
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.7e-113 413.3 356 61.5
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.7e-110 402.5 370 58.6
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-108 397.5 435 50.6
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.3e-107 394.4 359 58.8
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.2e-106 389.8 520 43.7
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.6e-105 387.5 452 49.8
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-104 384.4 350 58.6
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 4.3e-103 379.4 507 43.4
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.8e-101 374.0 494 46.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.6e-100 370.2 328 58.2
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.7e-99 367.5 346 55.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.4e-99 365.5 503 46.7
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 4.2e-98 362.8 601 40.6
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-95 354.4 401 50.1
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 8.1e-94 348.6 495 42.0
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 6.4e-91 339.0 338 55.3
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 3.9e-88 329.7 299 57.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-86 323.9 377 50.7
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-85 319.7 283 58.3
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 2.2e-83 313.9 299 56.2
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.8e-83 313.2 378 46.6
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.9e-83 312.8 268 61.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.8e-77 294.3 241 64.3
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 4.0e-77 293.1 352 48.9
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-74 284.6 242 59.9
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-73 279.6 242 58.3
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-71 273.1 372 43.8
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.1e-65 252.7 182 66.5
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-63 248.1 181 66.9
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.6e-60 237.3 229 53.7
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.2e-58 229.9 214 52.8
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-53 214.5 194 56.2
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 9.1e-53 212.2 256 49.2
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-52 209.9 391 36.1
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.0e-51 208.8 211 53.6
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 4.2e-50 203.4 498 33.3
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 7.2e-50 202.6 171 61.4
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.7e-46 190.3 129 71.3
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 7.0e-45 186.0 206 51.5
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-43 181.4 419 34.6
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.7e-41 174.1 201 49.3
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.0e-32 145.6 173 47.4
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 3.4e-31 140.6 449 29.8
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.5e-31 139.4 145 48.3
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.1e-29 135.6 105 66.7
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.7e-27 128.3 705 25.1
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 7.2e-26 122.9 124 58.1
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 6.8e-24 116.3 150 44.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 6.8e-24 116.3 95 60.0
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 9.2e-21 105.9 64 85.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-19 100.9 63 66.7
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-18 99.0 80 63.8
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-18 97.1 106 51.9
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 7.3e-18 96.3 106 50.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-17 95.1 106 50.9
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.0e-16 92.4 201 36.3
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-13 82.4 86 53.5
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.7e-12 77.8 87 42.5
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.6e-11 73.2 77 51.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-08 65.5 81 43.2
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-08 63.2 82 41.5
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 2.6e-07 61.2 132 38.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.6e-07 61.2 40 70.0
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-06 58.5 77 42.9


User provided reference genes

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