Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 4.4e-242 840.9 431 100.0
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.8e-227 792.3 432 94.2
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.6e-210 735.3 436 87.6
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.4e-203 713.0 432 85.0
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 2.9e-201 705.3 434 84.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 5.7e-197 691.0 433 82.4
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.1e-184 650.2 434 79.3
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.8e-182 642.9 435 78.4
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 1.8e-182 642.9 435 77.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 5.2e-182 641.3 430 75.6
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 5.2e-182 641.3 432 77.3
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 5.2e-182 641.3 429 78.8
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.3e-180 636.7 424 79.0
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 8.0e-151 537.7 424 65.3
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 4.0e-142 508.8 428 62.9
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 4.0e-142 508.8 431 63.6
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.2e-141 507.3 421 64.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.6e-141 506.1 438 63.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.4e-139 499.6 426 62.2
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 9.2e-139 497.7 448 59.8
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 4.6e-138 495.4 444 59.9
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 7.8e-138 494.6 425 61.9
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 5.1e-137 491.9 448 60.5
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 6.6e-137 491.5 425 60.2
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.3e-136 488.0 482 57.3
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-135 487.3 426 59.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 8.1e-135 484.6 434 58.5
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.4e-134 483.8 499 55.9
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.3e-134 483.0 462 58.4
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 5.2e-134 481.9 425 59.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.2e-133 480.7 427 59.3
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.0e-133 479.9 428 60.3
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 4.4e-133 478.8 436 58.7
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.7e-132 476.9 428 61.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 6.4e-132 474.9 425 58.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.1e-131 472.2 429 59.9
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 9.2e-131 471.1 431 59.4
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-130 470.7 426 59.2
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.1e-130 469.9 422 60.2
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 2.7e-130 469.5 426 56.6
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.5e-130 469.2 433 60.3
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.6e-130 468.8 426 59.9
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.6e-130 468.8 426 59.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.9e-129 465.7 430 59.1
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.6e-129 464.9 426 59.2
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 8.6e-129 464.5 428 59.3
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.1e-128 464.2 442 56.3
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-128 463.8 425 59.3
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.5e-128 463.0 440 56.6
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 5.6e-128 461.8 422 58.8
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.0e-125 453.4 428 56.1
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 9.9e-125 451.1 455 53.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-123 447.6 443 56.2
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-123 447.6 431 58.2
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 4.2e-123 445.7 419 59.2
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.7e-122 443.0 464 54.7
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.3e-121 440.7 481 51.4
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.3e-121 439.9 431 56.1
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 3.0e-121 439.5 448 55.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 3.9e-121 439.1 479 52.0
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 5.1e-121 438.7 431 57.1
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 6.6e-121 438.3 479 52.4
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.5e-120 437.2 456 53.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 3.3e-120 436.0 448 54.9
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 5.6e-120 435.3 456 52.6
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.3e-119 434.1 439 54.2
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.1e-119 433.3 456 51.8
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.2e-119 431.8 471 52.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.0e-118 429.1 431 54.5
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.2e-117 427.6 427 54.3
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 2.0e-117 426.8 443 56.4
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 9.9e-117 424.5 436 54.8
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.3e-116 424.1 449 54.8
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 2.2e-116 423.3 453 52.3
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.4e-115 420.6 492 49.2
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.4e-115 420.6 474 51.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.9e-115 420.2 503 48.3
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 2.3e-113 413.3 531 46.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 5.1e-113 412.1 465 50.5
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.1e-111 406.8 275 68.7
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.1e-111 406.8 466 48.5
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 5.3e-110 402.1 534 44.0
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.2e-108 396.7 278 67.6
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 4.9e-108 395.6 326 60.4
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 3.2e-107 392.9 534 45.1
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 2.7e-106 389.8 432 49.1
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.8e-102 377.1 428 49.8
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.6e-101 371.7 360 51.9
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.2e-100 370.2 349 54.7
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.9e-100 369.0 287 61.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 8.4e-100 368.2 300 61.7
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 5.5e-99 365.5 433 47.6
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.9e-96 357.1 269 63.6
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.5e-96 356.7 321 56.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 7.4e-96 355.1 266 63.2
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 9.6e-96 354.8 267 61.0
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 2.4e-94 350.1 267 58.8
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.3e-94 349.0 332 53.3
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 5.3e-94 349.0 517 42.6
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.3e-92 344.4 267 65.2
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 5.5e-91 339.0 266 59.0
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-90 337.0 276 61.2
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 2.5e-88 330.1 271 58.7
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 5.7e-88 328.9 533 39.8
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.6e-87 327.4 299 53.5
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.1e-86 324.7 267 57.3
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.1e-86 322.8 230 66.1
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.9e-82 308.5 247 57.5
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.7e-79 300.8 278 52.9
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.6e-77 293.5 298 51.3
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 4.5e-77 292.7 231 72.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.2e-74 284.6 194 68.0
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.0e-73 281.6 269 53.2
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.8e-73 280.8 278 51.4
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.5e-69 267.7 267 52.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.0e-68 265.0 178 73.6
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.5e-67 259.2 173 67.1
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 4.4e-64 249.6 179 64.2
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-59 234.6 137 81.8
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-56 224.6 217 50.7
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.5e-53 213.0 271 45.0
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 3.2e-51 206.8 241 56.4
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 7.2e-51 205.7 266 42.1
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.8e-47 193.7 271 41.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 8.3e-47 192.2 139 60.4
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.4e-46 190.7 289 38.4
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 9.5e-43 178.7 137 63.5
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 4.7e-42 176.4 253 40.7
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 5.2e-41 172.9 222 48.6
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 5.7e-40 169.5 299 37.5
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.6e-36 156.0 293 36.2
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 6.2e-34 149.4 102 62.7
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.5e-32 142.5 150 48.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.7e-28 131.3 303 33.0
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.4e-25 121.7 119 47.9
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.6e-24 117.5 98 55.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.8e-24 116.3 349 27.8
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 9.8e-24 115.5 76 72.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.5e-19 100.9 264 36.4
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 2.6e-16 90.9 122 54.1
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 6.6e-12 76.3 117 44.4
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.1e-11 75.5 51 62.7
BcaC07g41757 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-10 71.6 57 66.7
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-10 71.2 66 50.0
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.4e-09 67.8 102 35.3
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 6.8e-09 66.2 165 37.0
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 2.0e-08 64.7 80 46.2
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.6e-08 62.8 63 52.4


User provided reference genes

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