Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.6e-58 229.2 114 100.0
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 3.3e-51 204.9 114 89.5
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 5.6e-51 204.1 116 91.4
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.5e-43 179.5 115 81.7
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.9e-43 179.1 115 79.1
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-42 176.0 115 80.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-42 176.0 115 80.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-42 176.0 115 80.0
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 8.1e-42 173.7 115 77.4
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-41 172.9 115 80.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.8e-41 172.6 115 76.5
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.0e-41 171.4 116 73.3
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.0e-41 171.4 116 73.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.0e-40 169.1 115 74.8
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.0e-40 169.1 115 74.8
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.8e-40 167.5 115 76.5
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 5.8e-40 167.5 115 74.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.9e-39 165.2 115 73.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 6.4e-39 164.1 115 71.3
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-38 162.5 117 71.8
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.4e-38 161.0 115 70.4
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.2e-34 149.8 114 71.1
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-32 143.3 117 63.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 8.4e-31 137.1 118 62.7
BolC8t52343H Brassica oleracea HOM05D005226 ORTHO05D004666 7.3e-19 97.4 63 79.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.1e-17 93.6 115 48.7
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 5.3e-17 91.3 115 50.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.7e-15 86.3 112 47.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.7e-15 86.3 113 48.7
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.2e-15 85.9 113 47.8
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.9e-15 85.5 115 46.1
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 8.4e-15 84.0 101 48.5
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-14 83.6 117 45.3
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.4e-14 83.2 101 47.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-14 83.2 117 45.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.4e-14 83.2 98 50.0
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 5.4e-14 81.3 107 46.7
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 7.1e-14 80.9 112 43.8
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.3e-14 80.5 117 44.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-13 80.1 117 43.6
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 120 41.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.1e-13 79.3 82 54.9
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 3.5e-13 78.6 112 43.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.6e-13 78.2 106 47.2
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.9e-13 77.4 120 40.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.9e-13 77.4 120 40.0
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 7.9e-13 77.4 114 42.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.3e-12 76.6 101 48.5
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.3e-12 76.6 98 46.9
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.8e-12 76.3 104 44.2
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.9e-12 75.1 120 40.0
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 5.1e-12 74.7 109 42.2
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 5.1e-12 74.7 101 45.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.1e-11 73.6 100 47.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 121 39.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 120 40.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.1e-11 73.6 105 43.8
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.1e-11 73.6 113 44.2
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.5e-11 73.2 113 45.1
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.5e-11 73.2 96 45.8
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.5e-11 73.2 98 44.9
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.9e-11 72.8 113 42.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.9e-11 72.8 95 48.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.9e-11 72.8 110 43.6
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.5e-11 72.4 82 51.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.5e-11 72.4 76 51.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.5e-11 72.4 82 39.0
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 2.5e-11 72.4 73 53.4
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.3e-11 72.0 99 38.4
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.3e-11 72.0 103 42.7
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 4.3e-11 71.6 98 43.9
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.6e-11 71.2 103 43.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.6e-11 71.2 100 39.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.6e-11 71.2 71 47.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.4e-11 70.9 98 46.9
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 7.4e-11 70.9 104 42.3
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.3e-10 70.1 102 45.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.3e-10 70.1 115 37.4
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.6e-10 68.6 96 41.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.6e-10 68.6 100 38.0
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.8e-10 68.2 100 37.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.2e-10 67.8 96 40.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.2e-10 67.8 98 45.9
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 6.2e-10 67.8 73 42.5
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.2e-10 67.8 112 40.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.4e-09 66.6 101 38.6
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.4e-09 65.9 103 37.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.4e-09 65.9 101 46.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.4e-09 65.9 96 41.7
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.1e-09 65.5 105 42.9
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 3.1e-09 65.5 93 46.2
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 3.1e-09 65.5 93 46.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.1e-09 65.5 99 39.4
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.1e-09 65.5 99 39.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.0e-09 65.1 74 48.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 5.3e-09 64.7 73 39.7
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 5.3e-09 64.7 113 38.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 6.9e-09 64.3 86 40.7
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 6.9e-09 64.3 90 47.8
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 9.0e-09 63.9 105 41.9
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 9.0e-09 63.9 107 36.4
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.2e-08 63.5 72 54.2
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 114 38.6
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.2e-08 63.5 70 52.9
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-08 63.2 102 41.2
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-08 63.2 102 41.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-08 63.2 102 41.2
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.5e-08 63.2 107 36.4
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.5e-08 63.2 78 41.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.0e-08 62.8 98 37.8
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-08 62.8 98 43.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.0e-08 62.8 90 45.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.6e-08 62.4 98 36.7
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.4e-08 62.0 102 42.2
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.4e-08 62.0 98 42.9
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.4e-08 62.0 98 42.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 5.8e-08 61.2 113 37.2
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.6e-08 60.8 124 35.5
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 7.6e-08 60.8 68 41.2
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 9.9e-08 60.5 119 33.6
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 33.6
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 33.6
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 33.6
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.3e-07 60.1 68 38.2
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.2e-07 59.3 122 33.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.9e-07 58.9 96 38.5
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.9e-07 58.9 119 33.6
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 3.8e-07 58.5 66 48.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 3.8e-07 58.5 95 40.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.9e-07 58.2 73 47.9
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 4.9e-07 58.2 64 45.3
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.9e-07 58.2 88 38.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.9e-07 58.2 90 40.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.9e-07 58.2 120 34.2
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.9e-06 56.2 52 59.6
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.4e-06 55.8 72 36.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.2e-06 55.1 78 38.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.2e-06 55.1 90 36.7
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.2e-06 55.1 104 33.7
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 5.5e-06 54.7 119 31.9
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.5e-06 54.7 70 44.3
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 7.1e-06 54.3 120 33.3


User provided reference genes

Program Settings