Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1571.2 874 100.0
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1493.4 874 95.2
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1436.4 874 89.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1412.5 874 87.2
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 0.0e+00 1372.8 876 87.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1340.1 875 86.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1300.8 876 82.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1295.4 941 76.1
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1293.1 876 82.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1291.6 875 81.9
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1291.6 875 81.9
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1290.4 877 81.1
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1275.8 905 78.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1258.4 908 76.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1254.2 941 75.7
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1225.3 900 77.8
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1199.9 812 80.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1104.7 877 69.8
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.2e-300 1034.6 877 66.7
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-295 1020.0 875 65.5
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-292 1009.6 864 66.4
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.4e-287 991.1 875 66.1
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.5e-268 929.1 876 63.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.4e-213 747.3 909 49.8
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.5e-212 743.8 907 50.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.6e-212 743.0 898 50.8
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.7e-212 741.9 905 49.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.0e-208 731.1 903 50.7
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 5.0e-208 728.8 915 50.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.9e-205 719.2 915 50.1
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.5e-204 717.2 886 49.8
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.5e-204 717.2 924 49.4
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-202 711.1 912 50.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.6e-201 707.2 936 48.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.7e-200 703.7 910 49.9
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.0e-196 690.3 913 47.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.0e-196 690.3 931 47.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.0e-196 690.3 915 47.8
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.7e-195 687.2 911 47.5
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.2e-195 686.8 914 48.2
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.2e-193 681.0 899 49.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.7e-193 679.9 888 49.4
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.5e-193 679.5 799 51.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 4.5e-193 679.1 891 49.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 7.7e-193 678.3 914 47.5
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 8.5e-192 674.9 945 45.7
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.5e-191 674.1 940 45.4
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.7e-190 669.8 896 48.5
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-190 669.5 910 48.1
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 3.6e-190 669.5 943 47.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-189 666.0 910 47.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.0e-189 666.0 920 46.7
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.5e-188 664.1 973 45.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.6e-188 663.3 919 47.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.4e-188 662.9 938 46.1
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.4e-188 662.5 906 46.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 9.8e-188 661.4 969 44.9
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 3.7e-187 659.4 949 46.0
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.8e-186 657.1 919 46.7
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 1.8e-186 657.1 949 46.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 7.0e-186 655.2 841 49.6
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 7.0e-186 655.2 931 46.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 7.0e-186 655.2 891 48.1
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.2e-185 654.4 1027 44.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-185 654.1 970 44.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 7.7e-185 651.7 888 49.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.8e-184 649.4 971 44.6
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.0e-184 649.0 913 46.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 6.5e-184 648.7 891 47.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.1e-183 647.9 816 49.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.5e-183 647.5 819 49.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.5e-183 647.5 915 46.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.2e-183 646.4 970 44.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.2e-183 646.4 971 45.2
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.2e-183 646.0 928 47.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 2.1e-182 643.7 942 44.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.0e-181 641.3 860 49.3
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.3e-181 640.2 985 44.2
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.2e-180 637.9 999 42.9
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 3.4e-180 636.3 899 44.7
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.4e-180 636.0 861 46.2
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.8e-179 633.3 978 44.4
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 8.3e-179 631.7 911 44.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.1e-178 629.4 808 48.0
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 5.4e-178 629.0 907 45.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.2e-178 628.2 947 46.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.2e-178 628.2 883 45.8
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.2e-177 627.9 970 43.4
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.6e-177 627.5 801 46.8
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 7.8e-177 625.2 820 46.8
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.8e-177 625.2 772 49.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.9e-176 623.2 997 44.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 4.0e-173 612.8 922 43.3
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.6e-172 610.1 886 45.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 3.4e-172 609.8 914 45.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.4e-172 609.8 945 43.7
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 5.4e-170 602.4 798 47.1
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 6.0e-169 599.0 974 43.7
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 6.6e-168 595.5 918 43.2
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.4e-165 587.8 786 46.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.2e-165 585.9 853 45.6
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 6.8e-165 585.5 877 44.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 2.0e-164 583.9 925 42.4
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 9.8e-164 581.6 846 43.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 9.8e-164 581.6 903 45.6
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.9e-163 580.1 823 43.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-162 577.8 874 46.6
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.2e-162 575.1 932 42.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.6e-161 574.3 1050 39.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 7.8e-161 572.0 845 43.4
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.6e-158 563.1 897 42.3
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.2e-158 562.4 828 43.7
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-157 560.8 783 44.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.8e-157 560.8 828 43.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.6e-156 557.0 1003 39.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.3e-155 554.7 939 41.4
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-155 553.9 832 43.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.7e-155 553.1 806 44.0
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.6e-153 546.2 1003 38.7
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.4e-149 533.9 937 40.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.0e-148 530.8 784 45.2
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.2e-146 523.5 783 44.6
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 3.2e-138 496.9 818 40.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 7.8e-137 492.3 805 43.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.0e-132 477.6 951 38.6
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 5.1e-128 463.0 918 39.4
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-125 455.3 913 39.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.7e-115 421.4 858 37.1
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 4.6e-113 413.3 811 37.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-107 394.0 975 34.5
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-107 394.0 975 34.5
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 7.2e-106 389.4 923 33.9
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.3e-102 378.6 367 57.5
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.1e-93 347.1 795 35.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-90 339.0 534 41.4
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.5e-90 336.7 665 37.4
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-78 298.5 336 53.3
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.5e-74 284.6 285 54.0
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.8e-70 271.2 186 82.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 7.5e-63 246.5 323 49.2
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.6e-60 238.8 980 26.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 7.8e-60 236.5 477 37.7
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.8e-56 225.3 251 53.4
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.4e-53 215.7 391 42.2
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 4.0e-48 197.6 259 42.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.2e-41 176.0 137 70.1
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.9e-40 169.9 394 35.5
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.2e-33 149.4 495 29.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 8.9e-32 143.3 185 43.8
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.6e-28 132.5 92 79.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.6e-28 132.5 98 67.3
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-27 129.4 92 71.7
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.3e-26 124.8 178 47.8
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 7.3e-26 123.6 156 43.6
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-23 115.9 111 54.1
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 8.4e-22 110.2 86 66.3
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 8.4e-22 110.2 159 47.8
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.1e-18 99.8 82 64.6
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.5e-18 99.4 89 59.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.9e-18 99.0 79 65.8
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 6.2e-17 94.0 89 57.3
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 4.0e-16 91.3 72 58.3
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 9.0e-16 90.1 59 76.3
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.2e-15 89.7 118 43.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-15 88.2 71 64.8
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.9e-14 84.3 57 77.2
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 8.4e-14 83.6 106 45.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.7e-12 78.6 84 53.6
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 6.0e-12 77.4 92 50.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-11 76.6 63 71.4
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 6.7e-11 73.9 95 42.1
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.3e-10 71.2 92 43.5
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 9.6e-10 70.1 126 39.7
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.1e-08 66.6 57 54.4
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 6.9e-08 63.9 60 56.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.5e-07 62.8 60 50.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.4e-07 61.6 47 68.1
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.3e-06 59.7 126 34.1


User provided reference genes

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