Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G21800 Arabidopsis lyrata HOM05D007610 ORTHO05D009592 1.6e-35 152.1 72 100.0
BolC8t52386H Brassica oleracea HOM05D007610 ORTHO05D009592 1.3e-34 149.1 72 97.2
AT1G10865 Arabidopsis thaliana HOM05D007610 ORTHO05D009592 3.0e-34 147.9 72 95.8
Aa31LG1G3990 Aethionema arabicum HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
A09p64730 Brassica napus HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
C08p48470 Brassica napus HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
BraA09t41821Z Brassica rapa HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
Thhalv10009851m.g Eutrema salsugineum HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
Sp1g09560 Schrenkiella parvula HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 95.8
CARHR011080 Cardamine hirsuta HOM05D007610 ORTHO05D009592 8.7e-34 146.4 72 94.4
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-32 141.4 69 95.7
Gohir.A08G224300 Gossypium hirsutum HOM05D007610 ORTHO05D009592 6.2e-32 140.2 72 90.3
Gohir.D08G244600 Gossypium hirsutum HOM05D007610 ORTHO05D009592 6.2e-32 140.2 72 90.3
Gorai.004G260900 Gossypium raimondii HOM05D007610 ORTHO05D009592 6.2e-32 140.2 72 90.3
Ah.09g231800 Amaranthus hybridus HOM05D007610 ORTHO05D009592 1.1e-31 139.4 72 90.3
PGR083G1775 Punica granatum HOM05D007610 ORTHO05D009592 1.8e-31 138.7 72 90.3
Sc10g0005460 Simmondsia chinensis HOM05D007610 ORTHO05D009592 4.0e-31 137.5 72 87.5
Manes.06G155800 Manihot esculenta HOM05D007610 ORTHO05D009592 5.3e-31 137.1 72 87.5
Phvul.005G082100 Phaseolus vulgaris HOM05D007610 ORTHO05D009592 5.3e-31 137.1 72 88.9
THA.LOC104823659 Tarenaya hassleriana HOM05D007610 ORTHO05D009592 9.0e-31 136.3 72 90.3
Glyma.12G229900 Glycine max HOM05D007610 ORTHO05D009592 1.2e-30 136.0 72 87.5
Thecc.05G204400 Theobroma cacao HOM05D007610 ORTHO05D009592 1.2e-30 136.0 72 88.9
CAN.G1008.28 Capsicum annuum HOM05D007610 ORTHO05D009592 1.5e-30 135.6 72 88.9
EL10Ac8g19396 Beta vulgaris HOM05D007610 ORTHO05D009592 2.0e-30 135.2 72 86.1
Duzib128G1002 Durio zibethinus HOM05D007610 ORTHO05D009592 2.6e-30 134.8 72 87.5
Sopen03g036810 Solanum pennellii HOM05D007610 ORTHO05D009592 2.6e-30 134.8 72 87.5
PGSC0003DMG400014163 Solanum tuberosum HOM05D007610 ORTHO05D009592 2.6e-30 134.8 72 87.5
MELO3C012466.2 Cucumis melo HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 86.1
CsaV3_5G036700 Cucumis sativus L. HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 86.1
Glyma.13G269700 Glycine max HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 87.5
Sed0001467 Sechium edule HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 86.1
Lalb_Chr01g0016601 Lupinus albus HOM05D007610 ORTHO05D009592 4.5e-30 134.0 72 87.5
Sed0022524 Sechium edule HOM05D007610 ORTHO05D009592 4.5e-30 134.0 72 86.1
CDE07G1447 Ceratophyllum demersum HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 84.7
CANSAT56G1772 Cannabis sativa HOM05D007610 ORTHO05D009592 1.0e-29 132.9 72 87.5
Potri.008G010300 Populus trichocarpa HOM05D007610 ORTHO05D009592 1.3e-29 132.5 72 86.1
Solyc03g117900.3 Solanum lycopersicum HOM05D007610 ORTHO05D009592 1.3e-29 132.5 72 86.1
Lalb_Chr20g0109261 Lupinus albus HOM05D007610 ORTHO05D009592 1.7e-29 132.1 72 86.1
ATR0743G067 Amborella trichopoda HOM05D007610 ORTHO05D009592 2.2e-29 131.7 72 86.1
CiPaw.10G111700 Carya illinoinensis HOM05D007610 ORTHO05D009592 2.2e-29 131.7 72 87.5
Eucgr.H00670 Eucalyptus grandis HOM05D007610 ORTHO05D009592 2.2e-29 131.7 72 87.5
MD08G1038400 Malus domestica HOM05D007610 ORTHO05D009592 2.2e-29 131.7 72 87.5
Prupe.1G386000 Prunus persica HOM05D007610 ORTHO05D009592 2.9e-29 131.3 72 88.9
Lj6g0018100 Lotus japonicus HOM05D007610 ORTHO05D009592 3.8e-29 131.0 72 84.7
Peaxi162Scf00314g00832 Petunia axillaris HOM05D007610 ORTHO05D009592 3.8e-29 131.0 72 86.1
arahy.Tifrunner.gnm1.ann1.TJ8EEM Arachis hypogaea HOM05D007610 ORTHO05D009592 4.9e-29 130.6 72 84.7
arahy.Tifrunner.gnm1.ann1.Z969QS Arachis hypogaea HOM05D007610 ORTHO05D009592 4.9e-29 130.6 72 84.7
RcHm_v2.0_Chr6g0300241 Rosa chinensis HOM05D007610 ORTHO05D009592 6.5e-29 130.2 72 86.1
TWI75G0175 Tripterygium wilfordii HOM05D007610 ORTHO05D009592 8.4e-29 129.8 72 86.1
Atru.chr1.2755 Acer truncatum HOM05D007610 ORTHO05D009592 1.1e-28 129.4 72 86.1
Nn4g24567 Nelumbo nucifera HOM05D007610 ORTHO05D009592 1.1e-28 129.4 72 84.7
FAN27G3309 Fragaria x ananassa HOM05D003072 ORTHO05D009592 1.4e-28 129.0 72 86.1
Potri.010G248800 Populus trichocarpa HOM05D007610 ORTHO05D009592 1.9e-28 128.6 72 83.3
HanXRQChr05g0157571 Helianthus annuus HOM05D007610 ORTHO05D009592 2.5e-28 128.3 72 86.1
HanXRQChr06g0174541 Helianthus annuus HOM05D007610 ORTHO05D009592 2.5e-28 128.3 72 86.1
GSVIVG01015971001 Vitis vinifera HOM05D007610 ORTHO05D009592 2.5e-28 128.3 72 83.3
GSVIVG01015989001 Vitis vinifera HOM05D007610 ORTHO05D009592 2.5e-28 128.3 72 83.3
Hma1.2p1_0338F.1_g129570 Hydrangea macrophylla HOM05D007610 ORTHO05D009592 4.2e-28 127.5 72 86.1
Dinv13690 Davidia involucrata HOM05D007610 ORTHO05D009592 5.5e-28 127.1 72 84.7
Lsat_1_v5_gn_1_30601 Lactuca sativa HOM05D007610 ORTHO05D009592 9.3e-28 126.3 72 84.7
PSO675G0688 Papaver somniferum HOM05D007610 ORTHO05D009592 9.3e-28 126.3 72 81.9
PSO732G0180 Papaver somniferum HOM05D007610 ORTHO05D009592 9.3e-28 126.3 72 81.9
Psat5g237320 Pisum sativum HOM05D007610 ORTHO05D009592 9.3e-28 126.3 71 83.1
Migut.I00647 Erythranthe guttata HOM05D007610 ORTHO05D009592 1.6e-27 125.6 72 84.7
Mapoly0035s0053 Marchantia polymorpha HOM05D007610 ORTHO05D009592 1.6e-27 125.6 72 80.6
ECA246G4312 Erigeron canadensis HOM05D007610 ORTHO05D009592 2.1e-27 125.2 70 85.7
CSS0020010 Camellia sinensis var. sinensis HOM05D007610 ORTHO05D009592 2.7e-27 124.8 72 83.3
Actinidia18276 Actinidia chinensis HOM05D007610 ORTHO05D009592 3.5e-27 124.4 72 81.9
Zm00001eb102930 Zea mays HOM05D007610 ORTHO05D009592 3.5e-27 124.4 72 81.9
CSS0005029 Camellia sinensis var. sinensis HOM05D007610 ORTHO05D009592 4.6e-27 124.0 72 83.3
Cc04_g05530 Coffea canephora HOM05D007610 ORTHO05D009592 6.0e-27 123.6 72 81.9
MSTRG.11209 Avicennia marina HOM05D007610 ORTHO05D009592 7.9e-27 123.2 72 81.9
Carub.0001s1040 Capsella rubella HOM05D007610 ORTHO05D009592 1.9e-25 118.6 58 93.1
AagrBONN_evm.TU.Sc2ySwM_228.2676 Anthoceros agrestis HOM05D007610 ORTHO05D009592 9.6e-25 116.3 72 75.0
TPR.G1215 Trifolium pratense HOM05D007610 ORTHO05D009592 3.7e-24 114.4 97 61.9
Ciclev10017354m.g Citrus clementina HOM05D007610 ORTHO05D009592 1.8e-23 112.1 58 87.9
AagrBONN_evm.TU.Sc2ySwM_344.3800 Anthoceros agrestis HOM05D007610 ORTHO05D009592 2.4e-23 111.7 72 70.8
VMungo1080G1821 Vigna mungo HOM05D007610 ORTHO05D009592 6.9e-23 110.2 61 78.7
MD00G1038600 Malus domestica HOM05D007610 ORTHO05D009592 1.2e-22 109.4 64 81.2
HPP92_003445 Vanilla planifolia HOM05D007610 ORTHO05D009592 1.2e-22 109.4 62 82.3
CBR_g23045 Chara braunii HOM05D007610 ORTHO05D009592 1.5e-22 109.0 72 70.8
Nitab4.5_0007669g0050 Nicotiana tabacum HOM05D007610 ORTHO05D009592 1.0e-21 106.3 63 79.4
Nitab4.5_0000976g0340 Nicotiana tabacum HOM05D007610 ORTHO05D009592 2.9e-21 104.8 59 81.4
FvH4_2g40490 Fragaria vesca HOM05D007610 ORTHO05D009592 3.8e-21 104.4 58 84.5
Cpa.g.c36937 Carica papaya HOM05D007610 ORTHO05D009592 6.5e-21 103.6 58 82.8
DCAR_021387 Daucus carota HOM05D007610 ORTHO05D009592 8.4e-21 103.2 59 81.4
Medtr2g076300 Medicago truncatula HOM05D007610 ORTHO05D009592 2.7e-19 98.2 61 70.5
Sabra08G0006100 Salix brachista HOM05D002706 ORTHO05D003253 2.7e-19 98.2 58 79.3
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.7e-19 98.2 58 77.6
Actinidia08923 Actinidia chinensis HOM05D007610 ORTHO05D009592 3.5e-19 97.8 58 79.3
Duzib106G1141 Durio zibethinus HOM05D007610 ORTHO05D009592 1.3e-18 95.9 60 76.7
Migut.K01190 Erythranthe guttata HOM05D007610 ORTHO05D009592 8.7e-18 93.2 58 77.6
Dinv23251 Davidia involucrata HOM05D007610 ORTHO05D009592 7.4e-17 90.1 48 85.4
Oeu036461.1 Olea europaea HOM05D007610 ORTHO05D009592 1.0e-13 79.7 64 64.1
Oeu036457.1 Olea europaea HOM05D007610 ORTHO05D009592 5.0e-13 77.4 64 62.5
MCO01G475 Micromonas commoda HOM05D007610 ORTHO05D009592 3.2e-12 74.7 72 50.0
ClCG05G026760 Citrullus lanatus HOM05D007610 ORTHO05D009592 7.2e-12 73.6 43 79.1
Cre01.g069107 Chlamydomonas reinhardtii HOM05D007610 ORTHO05D009592 7.9e-11 70.1 69 44.9
PRCOL_00003475 Prasinoderma coloniale HOM05D007610 ORTHO05D009592 1.0e-10 69.7 72 50.0
SHI04239 Sapria himalayana HOM05D007610 ORTHO05D009592 6.7e-10 67.0 73 45.2
Pp3c10_17250 Physcomitrium patens HOM05D007610 ORTHO05D009592 3.3e-09 64.7 64 48.4


User provided reference genes

Program Settings