Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.7e-185 652.5 320 100.0
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.3e-153 543.9 399 72.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.4e-152 543.1 425 68.7
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.7e-145 518.5 404 69.8
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 8.1e-140 500.7 426 65.3
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 6.2e-124 448.0 385 63.6
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 1.5e-114 416.8 404 58.2
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.2e-111 407.1 418 56.7
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.6e-111 406.8 419 56.6
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 3.5e-111 405.6 419 56.3
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.3e-110 402.9 400 58.2
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.8e-108 396.0 422 54.5
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 4.8e-108 395.2 423 54.4
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 4.8e-108 395.2 423 54.4
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 4.8e-108 395.2 423 54.4
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-107 393.7 422 54.3
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 6.5e-105 384.8 417 54.0
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 1.9e-96 356.7 382 54.5
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.2e-74 284.3 237 65.0
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 4.8e-68 262.3 392 40.6
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 3.1e-67 259.6 419 39.1
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.1e-67 259.6 394 40.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 9.1e-67 258.1 401 39.7
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 9.1e-67 258.1 416 38.0
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 9.1e-67 258.1 394 39.8
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-66 257.7 382 40.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.5e-66 256.1 382 40.1
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.5e-66 255.8 382 39.8
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.5e-66 255.8 389 41.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.5e-66 255.8 407 40.3
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.7e-65 253.8 400 40.0
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 2.9e-65 253.1 407 40.0
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 3.8e-65 252.7 416 39.2
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 3.2e-64 249.6 418 37.8
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.0e-62 244.6 408 37.0
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.4e-62 244.2 425 36.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-62 244.2 408 37.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 8.8e-62 241.5 407 37.1
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.2e-61 241.1 407 36.9
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.5e-61 240.7 399 39.3
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 2.6e-61 240.0 382 39.0
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 5.7e-61 238.8 377 39.3
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 5.7e-61 238.8 432 37.3
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.7e-60 237.3 232 59.9
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.8e-60 236.5 407 36.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.3e-60 235.0 408 36.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 1.1e-59 234.6 395 36.5
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 1.4e-59 234.2 407 36.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 4.1e-59 232.6 425 36.0
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 7.0e-59 231.9 412 37.6
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.2e-58 231.1 399 35.8
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.7e-58 229.9 401 36.9
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.7e-58 229.9 408 38.2
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.3e-57 226.9 419 36.3
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 3.8e-57 226.1 370 35.7
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 3.8e-57 226.1 419 37.2
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 6.5e-57 225.3 245 55.5
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 8.6e-57 224.9 473 34.0
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.5e-56 224.2 417 35.7
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.5e-56 224.2 419 35.8
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.5e-56 224.2 405 35.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 4.2e-56 222.6 425 35.5
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.2e-56 222.6 419 36.8
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 5.5e-56 222.2 412 36.2
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 5.5e-56 222.2 419 36.3
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.6e-55 220.7 391 35.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 2.8e-55 219.9 417 35.7
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 2.8e-55 219.9 375 37.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 3.6e-55 219.5 418 35.4
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 8.0e-55 218.4 421 34.9
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 1.0e-54 218.0 394 38.3
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.3e-54 216.9 359 38.7
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 4.0e-54 216.1 446 34.5
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 8.8e-54 214.9 412 34.5
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 8.8e-54 214.9 216 55.1
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 8.8e-54 214.9 392 36.2
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.6e-53 213.4 439 32.8
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 7.5e-53 211.8 370 36.8
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.3e-52 211.1 240 49.6
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 4.9e-52 209.1 398 34.7
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 4.9e-52 209.1 358 38.5
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 6.3e-52 208.8 416 35.3
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 6.3e-52 208.8 398 36.2
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 8.3e-52 208.4 385 36.4
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.1e-51 208.0 398 35.2
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 3.1e-51 206.5 350 36.3
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 7.0e-51 205.3 221 57.9
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 7.0e-51 205.3 221 57.9
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 1.2e-50 204.5 208 53.8
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.6e-50 204.1 416 34.6
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.0e-49 201.4 427 34.7
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.3e-49 201.1 381 34.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.8e-49 199.5 398 35.4
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 4.3e-48 196.1 400 34.0
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.6e-48 195.7 216 50.5
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 5.6e-48 195.7 363 35.3
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 9.5e-48 194.9 389 35.0
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 3.6e-47 193.0 417 32.4
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.4e-46 191.0 410 32.4
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.3e-46 190.3 246 47.2
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 2.3e-46 190.3 376 35.1
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.0e-45 187.2 203 51.7
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 9.8e-45 184.9 205 50.7
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 2.4e-43 180.3 411 32.6
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.0e-42 177.2 243 45.7
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.0e-42 177.2 357 35.0
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.3e-41 174.5 183 50.3
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 1.1e-40 171.4 411 31.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-40 171.0 190 50.5
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 9.5e-40 168.3 402 29.9
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.2e-37 161.4 333 30.9
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 9.8e-37 158.3 257 37.7
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 9.8e-37 158.3 323 33.7
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.2e-34 151.4 420 29.8
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 3.5e-34 149.8 107 68.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 3.5e-34 149.8 228 42.1
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 2.1e-31 140.6 206 41.7
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.8e-30 137.5 179 46.4
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 2.6e-29 133.7 167 46.7
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 3.7e-28 129.8 83 74.7
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 3.7e-28 129.8 147 51.0
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.1e-23 114.0 157 41.4
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.4e-22 111.3 89 62.9
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.5e-21 107.8 240 34.2
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 7.6e-21 105.5 214 35.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.4e-19 101.3 164 43.9
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 2.4e-19 100.5 253 32.0
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 3.5e-18 96.7 463 24.8
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 4.6e-18 96.3 109 45.0
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 6.6e-17 92.4 304 27.0
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 2.5e-16 90.5 115 39.1
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 2.5e-16 90.5 124 41.9
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.4e-14 84.7 109 39.4
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.4e-14 84.7 307 25.4
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-14 84.3 80 51.2
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 2.0e-13 80.9 124 42.7
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-13 80.1 165 35.2
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 9.9e-13 78.6 67 59.7
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.1e-11 75.1 94 44.7
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 9.3e-11 72.0 102 39.2
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 1.2e-10 71.6 66 54.5
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.1e-10 70.9 162 30.9
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 3.5e-10 70.1 91 41.8
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.9e-08 64.3 55 58.2
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.3e-08 63.2 128 32.0
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.4e-06 57.4 100 36.0
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 6.9e-06 55.8 73 46.6


User provided reference genes

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