Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 2.9e-82 310.5 236 100.0
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.4e-73 281.6 236 93.6
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 8.2e-69 265.8 236 89.8
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 5.3e-68 263.1 238 90.8
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 1.2e-67 261.9 236 90.3
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 1.5e-59 235.0 236 86.0
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.0e-58 232.3 236 85.2
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 9.4e-57 225.7 239 84.5
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 4.7e-56 223.4 236 84.3
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 1.5e-54 218.4 236 83.1
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 8.8e-47 192.6 237 77.2
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 7.5e-46 189.5 237 75.9
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 2.4e-28 131.3 225 52.0
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 3.1e-28 131.0 162 50.6
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.0e-26 125.9 152 52.0
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 2.9e-26 124.4 248 62.9
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 1.1e-25 122.5 178 44.4
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 4.7e-24 117.1 204 56.9
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 8.0e-24 116.3 150 47.3
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.0e-23 115.9 172 43.0
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.0e-23 115.9 204 56.4
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.4e-23 115.5 172 43.0
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 3.0e-23 114.4 257 58.8
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 8.9e-23 112.8 149 49.0
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 1.2e-22 112.5 155 42.6
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.5e-22 112.1 254 55.9
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 2.0e-22 111.7 173 42.8
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 2.0e-22 111.7 173 39.9
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 4.4e-22 110.5 213 51.2
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 1.3e-21 109.0 252 56.7
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.9e-21 107.8 236 61.9
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.9e-21 107.8 236 58.9
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.7e-21 107.5 106 58.5
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 3.2e-20 104.4 154 42.9
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 3.2e-20 104.4 236 61.4
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 9.2e-20 102.8 155 57.4
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 1.2e-19 102.4 187 70.6
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.6e-19 102.1 154 42.9
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.5e-19 100.9 262 52.3
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 5.9e-19 100.1 208 54.8
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 5.9e-19 100.1 171 40.4
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 7.8e-19 99.8 258 55.0
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 1.0e-18 99.4 154 40.9
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.7e-18 98.6 170 37.6
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.3e-18 98.2 225 50.7
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.3e-18 98.2 251 56.2
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 2.3e-18 98.2 157 43.3
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.3e-18 98.2 145 67.6
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 2.3e-18 98.2 156 57.7
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 3.0e-18 97.8 251 56.2
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 3.0e-18 97.8 251 56.2
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 8.6e-18 96.3 174 72.4
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 8.6e-18 96.3 151 41.7
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 8.6e-18 96.3 133 70.7
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.5e-17 95.5 125 73.6
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.9e-17 95.1 236 59.7
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 2.5e-17 94.7 246 56.5
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.5e-17 94.7 134 71.6
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 3.3e-17 94.4 252 56.3
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.6e-17 93.6 158 42.4
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 5.6e-17 93.6 154 41.6
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 7.3e-17 93.2 247 55.9
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 1.2e-16 92.4 174 39.1
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 1.2e-16 92.4 215 49.3
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 1.6e-16 92.0 103 52.4
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 2.8e-16 91.3 237 58.2
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 1.4e-15 89.0 260 54.6
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.8e-15 88.6 264 54.2
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.8e-15 88.6 264 54.2
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 2.3e-15 88.2 148 39.2
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 8.9e-15 86.3 153 74.5
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-14 85.1 142 66.2
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.0e-14 85.1 99 47.5
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 3.4e-14 84.3 158 39.9
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 9.8e-14 82.8 131 88.5
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.7e-13 82.0 228 46.5
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.7e-13 82.0 157 59.9
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.7e-13 82.0 92 50.0
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 3.7e-13 80.9 116 74.1
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 8.3e-13 79.7 122 64.8
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.1e-12 79.3 172 36.6
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.2e-12 77.8 89 48.3
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.2e-12 77.8 142 35.9
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 5.4e-12 77.0 176 48.3
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 7.0e-12 76.6 162 37.0
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.0e-11 75.1 142 53.5
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-11 75.1 93 50.5
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 3.5e-11 74.3 90 48.9
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 6.0e-11 73.6 162 34.6
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 7.8e-11 73.2 105 45.7
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 7.8e-11 73.2 94 43.6
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 7.8e-11 73.2 151 37.7
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 6.6e-10 70.1 155 54.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 8.6e-10 69.7 105 43.8
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 1.5e-09 68.9 102 43.1
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 1.5e-09 68.9 122 39.3
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.9e-09 68.6 92 45.7
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 5.6e-09 67.0 93 43.0
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 1.2e-08 65.9 145 32.4
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 4.7e-08 63.9 157 56.1
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 8.1e-08 63.2 164 54.3
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 8.1e-08 63.2 81 40.7
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.8e-07 62.0 96 40.6
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.8e-07 62.0 53 52.8
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.8e-07 62.0 53 52.8
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 2.6e-06 58.2 106 35.8
Cpa.g.sc177.11 Carica papaya HOM05D006739 ORTHO05D008402 3.4e-06 57.8 137 36.5
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 4.4e-06 57.4 70 42.9


User provided reference genes

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