Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.5e-65 251.9 123 100.0
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.7e-61 239.2 125 94.4
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 5.4e-60 234.2 125 92.8
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 3.0e-58 228.4 125 90.4
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 6.2e-56 220.7 125 87.2
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 8.1e-56 220.3 125 84.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 8.1e-56 220.3 125 84.8
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 8.1e-56 220.3 125 84.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.8e-55 219.2 125 84.0
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.8e-55 219.2 126 87.3
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.1e-52 209.9 125 80.8
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.3e-50 202.2 125 80.0
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.4e-39 165.6 125 65.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.4e-39 165.6 122 66.4
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.0e-38 162.5 119 68.9
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.4e-38 161.8 124 65.3
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.5e-38 161.4 125 65.6
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 5.8e-38 161.0 125 65.6
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 9.9e-38 160.2 124 62.1
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.3e-37 159.8 125 64.8
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 2.2e-37 159.1 124 63.7
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 6.4e-37 157.5 129 61.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 6.4e-37 157.5 126 64.3
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.9e-36 156.0 119 63.9
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 2.4e-36 155.6 128 62.5
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 2.4e-36 155.6 125 64.8
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.2e-36 154.8 119 61.3
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.5e-36 154.5 124 62.9
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 7.1e-36 154.1 119 58.0
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 9.3e-36 153.7 119 63.9
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.2e-35 153.3 125 60.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.6e-35 152.9 128 57.8
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.1e-35 152.5 119 60.5
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.1e-35 152.5 141 56.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.7e-35 152.1 122 59.8
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 4.6e-35 151.4 125 59.2
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 6.0e-35 151.0 124 61.3
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.3e-34 149.8 125 60.0
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.8e-34 149.4 122 59.0
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-34 149.1 122 59.0
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 2.3e-34 149.1 125 60.8
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 3.0e-34 148.7 119 59.7
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 6.7e-34 147.5 119 58.0
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 8.7e-34 147.1 128 58.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.1e-33 146.7 122 58.2
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.5e-33 146.4 124 62.1
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.9e-33 146.0 123 60.2
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.3e-33 145.2 122 59.8
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 4.3e-33 144.8 123 55.3
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 4.3e-33 144.8 127 55.1
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 4.3e-33 144.8 123 59.3
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.6e-33 144.4 124 60.5
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 5.6e-33 144.4 122 59.8
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.4e-33 144.1 122 57.4
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 7.4e-33 144.1 120 60.0
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.3e-32 143.3 124 56.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.1e-32 142.5 124 58.9
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.8e-32 142.1 122 59.0
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.8e-32 142.1 125 56.0
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-32 142.1 124 60.5
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.8e-32 142.1 136 55.1
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.8e-32 141.4 118 60.2
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 8.2e-32 140.6 133 59.4
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 8.2e-32 140.6 125 57.6
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-31 140.2 124 59.7
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.4e-31 139.8 122 57.4
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.4e-31 139.8 136 55.1
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 2.4e-31 139.0 120 58.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 9.0e-31 137.1 124 56.5
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 9.0e-31 137.1 132 53.0
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.5e-30 136.3 134 56.0
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 2.6e-30 135.6 127 55.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.6e-30 135.6 130 53.1
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.6e-30 135.6 129 55.8
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.6e-30 135.6 123 55.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.4e-30 135.2 120 59.2
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.8e-30 134.4 119 52.9
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.7e-29 132.9 119 53.8
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.2e-29 132.5 123 54.5
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.8e-29 131.7 124 53.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 3.8e-29 131.7 128 56.2
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 4.9e-29 131.3 90 66.7
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.9e-28 129.4 125 55.2
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.9e-28 129.4 126 51.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.9e-28 129.4 129 53.5
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.5e-28 129.0 120 56.7
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 4.2e-28 128.3 65 86.2
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 4.2e-28 128.3 124 51.6
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 4.2e-28 128.3 119 54.6
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 5.5e-28 127.9 120 52.5
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 5.5e-28 127.9 122 54.9
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 9.3e-28 127.1 122 52.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.2e-27 126.7 120 57.5
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.2e-27 126.7 125 55.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.6e-27 126.3 125 53.6
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 3.5e-27 125.2 123 54.5
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 4.6e-27 124.8 129 49.6
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 120 54.2
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.3e-26 122.5 120 55.8
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.9e-26 121.7 132 49.2
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 5.1e-26 121.3 115 52.2
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.1e-25 120.2 126 50.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.5e-25 119.8 122 50.8
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 5.7e-25 117.9 122 52.5
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 7.4e-25 117.5 118 52.5
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.1e-23 113.6 122 52.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.4e-23 113.2 116 51.7
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.9e-23 110.9 123 50.4
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 6.9e-23 110.9 125 47.2
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.0e-23 110.5 122 45.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.0e-23 110.5 122 45.9
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.5e-22 109.8 135 42.2
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.6e-22 109.0 119 48.7
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 5.0e-21 104.8 125 43.2
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 6.5e-21 104.4 114 45.6
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 8.5e-21 104.0 120 48.3
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 5.5e-20 101.3 112 44.6
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 5.5e-20 101.3 135 41.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 9.3e-20 100.5 121 46.3
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.7e-19 99.0 132 40.9
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 7.9e-19 97.4 132 37.9
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 1.7e-16 89.7 113 41.6
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.8e-16 89.0 67 56.7
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.4e-15 86.7 87 52.9
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.8e-15 86.3 64 54.7
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.6e-14 82.4 126 39.7
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 7.7e-14 80.9 63 55.6
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.0e-13 80.5 68 52.9
THA.LOC104816815 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.1e-12 77.0 56 67.9
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.4e-12 76.6 62 53.2
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.9e-12 76.3 82 35.4
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 7.2e-12 74.3 59 49.2
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 7.2e-12 74.3 131 32.8
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.7e-11 72.4 119 33.6
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.6e-11 72.0 62 46.8
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.0e-10 70.5 65 47.7
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.4e-10 70.1 46 60.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.0e-10 68.9 49 57.1
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 3.0e-10 68.9 81 44.4
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.1e-10 68.2 87 44.8
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.6e-09 65.9 129 38.8
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.6e-09 65.9 129 38.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.7e-08 63.2 124 30.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.7e-08 63.2 72 41.7
C05p60120 Brassica napus HOM05D017352 ORTHO05D097591 2.2e-08 62.8 55 65.5


User provided reference genes

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