Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 9.0e-193 676.8 349 100.0
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 4.6e-173 611.3 349 90.5
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 2.5e-166 589.0 356 86.8
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 7.9e-157 557.4 350 84.3
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 3.1e-153 545.4 352 82.7
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 6.5e-151 537.7 356 81.2
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 3.8e-143 511.9 355 79.4
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 3.3e-139 498.8 356 77.2
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 5.7e-139 498.0 353 77.1
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 5.3e-137 491.5 355 76.3
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 5.3e-137 491.5 355 76.3
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 3.2e-134 482.3 360 75.3
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 3.1e-129 465.7 348 71.0
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 8.6e-119 431.0 347 66.9
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 4.6e-96 355.5 360 54.4
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 1.0e-95 354.4 331 58.0
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 1.6e-93 347.1 344 56.4
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 4.0e-92 342.4 346 55.2
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 2.0e-91 340.1 350 52.6
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 2.6e-91 339.7 360 51.9
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 6.4e-90 335.1 338 55.0
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 3.2e-89 332.8 335 54.6
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 7.1e-89 331.6 351 54.4
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 1.0e-87 327.8 344 51.7
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 1.3e-87 327.4 337 54.0
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.7e-87 327.0 337 54.0
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.7e-87 327.0 337 53.7
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 1.7e-87 327.0 345 52.5
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 6.6e-87 325.1 329 57.1
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 6.6e-87 325.1 347 53.3
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 4.3e-86 322.4 339 53.4
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 7.3e-86 321.6 343 52.5
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 7.3e-86 321.6 328 53.0
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 4.7e-85 318.9 337 55.2
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 4.7e-85 318.9 335 53.1
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 8.1e-85 318.2 341 53.4
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 1.1e-84 317.8 341 52.8
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 1.4e-84 317.4 321 55.1
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.4e-84 317.4 371 48.8
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 2.4e-84 316.6 331 55.3
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 4.0e-84 315.8 326 52.1
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 4.0e-84 315.8 319 53.3
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 6.9e-84 315.1 329 53.8
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 1.2e-83 314.3 351 48.4
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 1.5e-83 313.9 338 52.1
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 3.4e-83 312.8 316 54.7
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 4.4e-83 312.4 332 52.1
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 7.6e-83 311.6 352 49.7
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.7e-82 310.5 320 54.7
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 2.2e-82 310.1 331 53.5
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 4.9e-82 308.9 320 53.4
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 4.9e-82 308.9 316 51.9
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 6.4e-82 308.5 337 49.6
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 6.4e-82 308.5 327 52.0
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.9e-81 307.0 319 50.5
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 2.4e-81 306.6 317 51.1
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 4.2e-81 305.8 332 54.8
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 4.2e-81 305.8 352 50.3
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 5.4e-81 305.4 334 49.4
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.6e-80 303.9 332 55.4
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 2.1e-80 303.5 337 52.2
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 3.5e-80 302.8 334 50.6
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.5e-80 302.8 335 54.6
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 3.5e-80 302.8 336 53.0
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.0e-79 301.2 334 53.9
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 1.0e-79 301.2 343 53.9
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.7e-79 300.4 322 55.0
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 1.5e-78 297.4 322 52.5
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 1.9e-78 297.0 345 48.1
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 9.6e-78 294.7 337 50.7
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 2.8e-77 293.1 323 51.4
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 4.8e-77 292.4 318 53.1
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 6.2e-77 292.0 319 51.1
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.4e-76 290.8 339 50.1
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 1.4e-76 290.8 325 50.8
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 2.4e-76 290.0 346 49.7
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 4.0e-76 289.3 339 50.7
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 9.0e-76 288.1 332 48.2
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 9.0e-76 288.1 336 46.7
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 4.5e-75 285.8 353 45.3
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 3.2e-73 279.6 437 40.7
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 1.8e-71 273.9 326 47.9
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 6.7e-71 271.9 330 49.4
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 1.1e-70 271.2 318 48.4
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 9.6e-70 268.1 378 45.2
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 6.9e-68 261.9 355 46.5
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 1.4e-65 254.2 272 52.6
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 2.4e-65 253.4 315 46.0
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 2.1e-64 250.4 326 46.6
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 6.7e-63 245.4 249 55.4
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 1.1e-62 244.6 282 47.9
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 1.1e-60 238.0 378 39.4
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 1.9e-54 217.2 267 50.2
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 3.6e-48 196.4 220 50.9
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 1.9e-46 190.7 452 33.2
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 3.6e-40 169.9 186 49.5
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.0e-39 168.3 370 30.0
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 2.2e-37 160.6 361 32.1
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 1.0e-34 151.8 135 60.0
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 2.3e-31 140.6 229 39.7
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 4.1e-28 129.8 292 35.6
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 5.5e-25 119.4 96 63.5
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 3.6e-24 116.7 482 25.3
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.2e-22 111.7 210 35.2
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.1e-20 105.1 71 74.6
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.2e-19 101.7 117 49.6
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 1.2e-19 101.7 180 39.4
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 2.0e-19 100.9 101 51.5
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 7.7e-19 99.0 250 28.8
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 3.8e-18 96.7 83 60.2
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 6.1e-16 89.4 82 57.3
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 9.8e-14 82.0 260 26.9
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 1.8e-12 77.8 127 41.7
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 4.1e-12 76.6 60 60.0
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.2e-11 75.1 57 54.4
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 2.7e-11 73.9 40 77.5
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.7e-11 73.9 51 58.8
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 4.5e-11 73.2 253 26.5
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 7.7e-11 72.4 57 56.1
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 5.7e-06 56.2 43 58.1


User provided reference genes

Program Settings