Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.2e-100 369.8 182 100.0
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.3e-99 365.5 182 98.4
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 8.8e-99 363.6 182 97.8
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 7.4e-98 360.5 182 97.8
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 4.8e-97 357.8 182 96.7
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.1e-96 356.7 182 96.2
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 1.2e-95 353.2 182 95.1
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 90.7
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 7.2e-93 344.0 178 93.8
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.2e-92 343.2 177 94.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 7.9e-92 340.5 174 94.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-91 339.7 174 94.8
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.1e-90 336.7 174 93.7
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.5e-90 336.3 174 93.7
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.5e-90 336.3 174 93.7
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 2.0e-90 335.9 173 94.2
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 4.1e-88 328.2 182 88.5
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.2e-87 326.6 182 86.3
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.2e-87 326.6 182 87.9
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.6e-87 326.2 182 86.3
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.6e-87 325.5 182 87.9
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 87.4
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 87.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 86.8
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 86.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 85.7
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 86.8
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 85.2
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 85.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 84.6
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.5e-85 319.7 182 84.6
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.5e-85 319.7 182 84.6
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.2
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.7
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 87.4
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 87.4
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.2
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 84.6
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 84.6
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 85.2
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.2e-85 318.5 182 84.6
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 85.7
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.2e-85 318.2 182 84.6
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.1
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 85.7
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 83.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.1
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 9.4e-85 317.0 179 86.0
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 84.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 82.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.2e-84 316.6 181 84.5
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 84.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 84.6
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 83.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 84.6
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.7e-84 315.5 182 84.1
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.7e-84 315.5 182 84.6
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 3.6e-84 315.1 183 87.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.6e-84 315.1 182 84.1
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.6e-84 315.1 182 83.0
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 3.6e-84 315.1 180 83.9
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.7e-84 314.7 180 83.3
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 8.0e-84 313.9 179 85.5
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.0e-83 313.5 182 83.0
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.0e-83 313.5 178 86.0
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.4e-83 313.2 182 84.1
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.4e-83 313.2 181 82.9
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.8e-83 312.8 182 83.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.8e-83 312.8 179 84.4
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.3e-83 312.4 178 84.3
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.0e-83 311.6 182 82.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 4.0e-83 311.6 176 85.2
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 4.0e-83 311.6 182 85.2
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 5.2e-83 311.2 178 83.7
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 6.7e-83 310.8 194 80.4
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-82 310.1 177 84.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 9.7e-82 307.0 172 86.0
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 9.7e-82 307.0 172 87.2
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-81 305.1 176 83.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 4.8e-81 304.7 173 86.1
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 4.8e-81 304.7 197 76.6
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.1e-80 303.5 176 83.5
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.8e-80 302.8 155 96.1
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.8e-80 302.8 182 83.0
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 2.4e-80 302.4 182 81.3
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.4e-80 302.4 182 80.8
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.1e-80 302.0 176 82.4
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.2e-79 300.1 173 82.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.6e-79 299.7 176 83.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 3.5e-79 298.5 182 79.1
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.9e-79 297.7 202 74.3
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 7.2e-77 290.8 178 82.6
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.0e-75 285.0 182 79.7
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 5.2e-75 284.6 208 70.7
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 9.8e-74 280.4 139 96.4
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.6e-71 273.1 152 84.2
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.8e-70 268.5 157 85.4
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 5.0e-70 268.1 155 85.2
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 5.5e-69 264.6 155 81.3
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 5.5e-69 264.6 149 83.9
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.2e-69 264.2 182 72.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.3e-67 259.2 182 70.3
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.0e-67 258.8 177 72.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 2.0e-66 256.1 151 84.1
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 6.3e-65 251.1 181 71.3
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.9e-61 239.6 130 87.7
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.0e-59 232.3 186 66.7
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.0e-59 232.3 127 85.8
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 3.2e-56 222.2 184 58.2
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 7.0e-56 221.1 125 82.4
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.2e-52 210.3 185 55.7
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 2.3e-51 206.1 155 67.7
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.2e-51 204.9 177 54.8
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 3.7e-49 198.7 105 89.5
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.4e-48 196.1 105 87.6
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 7.0e-48 194.5 105 87.6
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.5e-47 192.2 105 86.7
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 4.3e-45 185.3 92 96.7
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.1e-43 179.1 100 84.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.4e-42 175.6 100 84.0
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 6.0e-39 164.9 179 53.1
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.3e-38 162.9 154 57.8
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.1e-38 161.8 92 83.7
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.1e-37 160.6 91 78.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-36 156.4 86 83.7
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 6.4e-33 144.8 127 58.3
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.5e-29 132.9 92 72.8
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 8.9e-27 124.4 66 84.8
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.6e-26 122.9 87 71.3
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.3e-22 110.5 77 75.3
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.3e-19 98.6 70 70.0
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.4e-16 89.7 48 83.3
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.3e-13 79.3 56 62.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 29.7
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.8e-11 73.6 182 30.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.8e-11 73.6 180 28.3
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 9.0e-11 71.2 181 28.2
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 9.0e-11 71.2 49 75.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 29.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.5e-10 68.9 180 30.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.4e-09 64.7 182 28.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.0e-06 56.2 137 29.2


User provided reference genes

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