Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.2e-164 583.2 299 100.0
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 3.9e-152 541.6 299 94.3
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 8.3e-147 523.9 302 91.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 7.3e-143 510.8 302 89.4
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.0e-140 502.7 302 87.4
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.4e-138 495.7 286 89.5
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.9e-131 471.5 288 85.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 6.4e-131 471.1 287 85.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.1e-130 470.3 299 82.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.4e-130 469.2 287 86.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 7.1e-130 467.6 289 85.1
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.7e-129 465.7 288 83.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-121 439.5 278 82.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.3e-120 436.0 289 77.2
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 8.4e-115 417.5 265 78.9
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 8.7e-104 380.9 289 67.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.1e-102 376.3 289 68.9
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.1e-102 376.3 288 68.1
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 6.2e-102 374.8 288 67.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 4.0e-101 372.1 288 67.4
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.6e-100 369.4 289 67.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.4e-100 369.0 289 67.8
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.0e-99 367.5 289 66.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 4.9e-99 365.2 288 66.0
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.1e-98 364.0 287 67.2
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.5e-98 362.8 285 66.7
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.2e-98 362.5 290 65.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.5e-98 361.7 285 65.3
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.1e-97 359.8 244 73.4
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.6e-97 358.6 285 66.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.8e-96 356.7 290 65.2
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.3e-96 356.3 284 64.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.0e-96 355.9 286 65.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 3.0e-96 355.9 283 62.5
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.9e-96 355.5 289 65.1
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.7e-96 354.8 283 63.6
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.1e-95 354.0 285 64.9
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-95 353.6 284 64.4
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.5e-95 353.6 285 64.6
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.9e-95 353.2 285 63.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.3e-95 352.4 287 64.5
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.6e-94 350.1 287 64.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.6e-94 350.1 284 64.1
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-94 349.7 289 65.7
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.8e-94 349.4 283 63.6
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.8e-94 349.4 287 63.8
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.8e-94 348.6 289 65.4
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.1e-93 347.4 286 63.3
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 5.3e-93 345.1 286 62.2
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 9.0e-93 344.4 285 65.6
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 9.0e-93 344.4 287 63.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.2e-92 344.0 287 63.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.5e-92 343.6 287 62.0
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.4e-92 342.4 270 65.9
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.4e-92 342.4 287 60.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 4.5e-92 342.0 288 62.2
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 5.9e-92 341.7 290 62.4
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.0e-91 340.9 290 62.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.9e-91 339.3 270 65.9
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 5.0e-91 338.6 287 61.3
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.1e-90 337.4 285 61.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.9e-90 336.7 240 69.6
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.2e-90 335.9 264 65.9
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 4.2e-90 335.5 298 59.7
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 9.4e-90 334.3 283 60.8
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.6e-89 333.6 296 60.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 4.6e-89 332.0 298 61.4
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.0e-88 330.9 259 62.2
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.8e-88 330.1 298 58.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 6.7e-88 328.2 289 60.6
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 4.3e-87 325.5 243 70.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.7e-86 322.4 265 63.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.8e-85 320.1 288 60.4
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.8e-85 320.1 258 62.0
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 5.3e-85 318.5 293 59.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 9.1e-85 317.8 312 58.3
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 4.5e-84 315.5 291 57.4
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.0e-83 314.3 224 68.8
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.2e-83 313.2 222 68.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.8e-83 312.4 253 64.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 8.5e-83 311.2 218 70.6
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.1e-82 310.8 222 68.9
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.4e-82 310.5 285 58.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 7.2e-82 308.1 274 60.2
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.2e-81 307.4 242 66.1
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.6e-81 307.0 285 57.2
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 2.1e-81 306.6 266 59.8
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 7.9e-81 304.7 260 61.5
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.9e-80 302.4 243 64.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.7e-79 298.5 232 66.4
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.1e-77 294.3 256 59.0
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.5e-76 290.4 313 53.7
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.6e-76 289.7 266 56.0
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.8e-75 285.8 288 56.6
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 5.0e-75 285.4 290 54.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.9e-74 283.5 240 68.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.5e-74 282.0 283 55.1
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.6e-73 280.4 284 56.0
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 7.7e-68 261.5 268 52.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.8e-67 259.2 184 69.6
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 6.5e-67 258.5 231 53.2
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 8.5e-67 258.1 195 67.2
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.9e-66 256.9 222 54.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.2e-66 256.1 222 55.9
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 4.2e-66 255.8 228 54.8
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.7e-63 245.4 175 70.3
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.8e-61 240.4 175 65.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 9.1e-61 238.0 239 51.9
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.7e-60 235.0 288 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.9e-59 233.0 245 47.3
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.3e-56 223.4 233 50.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.8e-54 216.5 168 68.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-54 216.5 268 48.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.0e-52 210.3 238 45.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.5e-50 204.1 247 46.6
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.1e-40 169.9 112 72.3
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.9e-38 163.3 230 43.5
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 6.4e-38 162.2 135 65.2
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 3.3e-34 149.8 228 37.7
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.0e-32 142.9 78 87.2
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 4.0e-32 142.9 78 85.9
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.2e-31 141.4 130 60.0
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-31 139.8 78 85.9
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 3.4e-31 139.8 112 62.5
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.4e-29 134.4 79 86.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 5.4e-29 132.5 196 38.3
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 6.2e-25 119.0 80 77.5
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-23 113.6 81 67.9
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-17 94.7 52 92.3
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.6e-17 93.2 145 32.4
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 8.1e-17 92.0 101 51.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.1e-16 91.7 101 50.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.1e-16 91.7 101 50.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.0e-16 89.7 101 49.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.2e-16 89.4 101 49.5
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.2e-15 88.2 198 29.3
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 5.1e-11 72.8 56 62.5
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-10 70.9 100 42.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 4.8e-09 66.2 54 61.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.8e-08 64.3 60 56.7
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.1e-08 63.5 127 36.2
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 6.4e-06 55.8 218 26.1


User provided reference genes

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