Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 2.0e-54 215.7 124 100.0
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.8e-50 202.6 124 88.7
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 2.6e-46 188.7 124 83.1
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 8.5e-45 183.7 124 80.6
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 2.3e-42 175.6 124 77.4
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 3.0e-42 175.3 125 78.4
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 5.1e-42 174.5 125 77.6
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 8.8e-42 173.7 125 79.2
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 8.8e-42 173.7 125 79.2
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 5.7e-41 171.0 125 76.8
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 1.3e-40 169.9 126 78.6
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 1.3e-40 169.9 126 78.6
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 1.3e-40 169.9 126 78.6
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 1.7e-40 169.5 125 76.0
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 4.5e-38 161.4 124 75.0
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.1e-36 156.8 129 69.8
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 4.7e-35 151.4 129 67.4
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 5.3e-31 137.9 128 64.1
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.4e-26 123.2 124 55.6
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 1.8e-26 122.9 100 67.0
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 3.0e-26 122.1 124 65.3
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 2.0e-25 119.4 127 55.1
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 7.5e-25 117.5 124 53.2
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 7.5e-25 117.5 124 53.2
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 2.2e-24 115.9 127 55.9
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 3.7e-24 115.2 131 53.4
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 4.8e-24 114.8 102 60.8
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 6.3e-24 114.4 125 54.4
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 1.4e-23 113.2 128 54.7
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 2.4e-23 112.5 120 52.5
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 4.1e-23 111.7 132 51.5
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 4.1e-23 111.7 127 51.2
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 4.1e-23 111.7 124 50.8
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 5.3e-23 111.3 126 50.8
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 5.3e-23 111.3 131 53.4
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 7.0e-23 110.9 131 51.9
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 9.1e-23 110.5 97 61.9
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 1.6e-22 109.8 98 60.2
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 1.6e-22 109.8 123 49.6
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 2.7e-22 109.0 97 59.8
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 2.7e-22 109.0 133 57.1
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 4.5e-22 108.2 130 49.2
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 4.5e-22 108.2 125 52.8
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 1.3e-21 106.7 127 53.5
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.3e-21 106.7 156 46.2
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.7e-21 106.3 97 57.7
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.7e-21 106.3 134 50.0
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.2e-21 105.9 128 49.2
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.9e-21 105.5 134 50.0
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 2.9e-21 105.5 97 58.8
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 5.0e-21 104.8 126 51.6
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 6.5e-21 104.4 128 50.0
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 6.5e-21 104.4 128 50.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 6.5e-21 104.4 126 55.6
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 8.5e-21 104.0 125 48.0
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 8.5e-21 104.0 101 57.4
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 8.5e-21 104.0 125 49.6
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.1e-20 103.6 97 57.7
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 1.1e-20 103.6 108 56.5
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 1.1e-20 103.6 150 44.7
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 1.1e-20 103.6 127 55.1
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 1.1e-20 103.6 130 53.8
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.5e-20 103.2 127 52.8
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 1.5e-20 103.2 130 53.8
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 1.5e-20 103.2 121 50.4
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 1.9e-20 102.8 97 58.8
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 1.9e-20 102.8 100 57.0
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.5e-20 102.4 128 48.4
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 3.2e-20 102.1 127 48.0
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 3.2e-20 102.1 130 46.2
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 3.2e-20 102.1 125 51.2
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 4.2e-20 101.7 127 51.2
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 7.2e-20 100.9 97 55.7
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 9.4e-20 100.5 105 54.3
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.2e-19 100.1 100 55.0
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.2e-19 100.1 104 55.8
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 1.6e-19 99.8 103 56.3
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 8.0e-19 97.4 87 63.2
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.0e-18 97.1 97 54.6
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 1.0e-18 97.1 125 44.8
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.4e-18 96.7 85 63.5
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 1.4e-18 96.7 127 48.0
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 48.0
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 3.0e-18 95.5 101 52.5
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 4.0e-18 95.1 127 48.8
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 4.0e-18 95.1 101 53.5
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 5.2e-18 94.7 77 59.7
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 5.2e-18 94.7 119 47.1
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.2e-17 93.6 125 49.6
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 2.0e-17 92.8 77 61.0
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 4.4e-17 91.7 76 63.2
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 4.4e-17 91.7 76 63.2
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 9.8e-17 90.5 83 59.0
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 9.8e-17 90.5 136 45.6
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.7e-16 89.7 116 46.6
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.7e-16 88.6 91 51.6
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 3.7e-16 88.6 98 52.0
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 3.7e-16 88.6 98 52.0
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 1.6e-14 83.2 100 57.0
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 2.0e-14 82.8 133 46.6
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 4.5e-14 81.6 100 48.0
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 7.7e-14 80.9 100 48.0
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 1.3e-13 80.1 139 41.0
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 2.9e-13 79.0 122 43.4
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 5.0e-13 78.2 100 46.0
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 1.5e-12 76.6 130 43.8
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 1.8e-10 69.7 100 43.0
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.4e-07 60.1 73 47.9


User provided reference genes

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