Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 0.0e+00 1336.6 690 100.0
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 0.0e+00 1253.4 694 94.8
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 0.0e+00 1222.6 691 91.8
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 0.0e+00 1196.8 695 90.8
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 0.0e+00 1190.6 691 90.6
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1142.1 692 86.0
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1138.6 692 85.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 0.0e+00 1137.9 692 85.4
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 0.0e+00 1130.9 692 85.5
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 0.0e+00 1088.9 673 86.3
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 5.2e-309 1063.9 671 83.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 8.0e-302 1040.0 690 79.0
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 3.3e-287 991.5 693 76.2
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 5.6e-247 857.8 604 75.2
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 8.7e-232 807.4 683 63.0
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.0e-229 798.5 684 62.7
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 6.9e-229 797.7 689 62.1
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 4.5e-228 795.0 690 61.3
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 7.9e-225 784.3 681 61.8
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.9e-225 784.3 684 61.3
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 5.1e-224 781.6 683 60.6
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.9e-223 779.6 683 61.6
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.9e-223 779.6 681 61.2
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 4.3e-223 778.5 679 61.4
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.1e-222 776.2 598 66.7
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 9.0e-221 770.8 727 57.6
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.3e-219 766.9 683 60.2
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 7.1e-218 761.1 680 59.3
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 9.3e-218 760.8 680 59.4
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 9.3e-218 760.8 688 59.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.2e-217 760.4 685 60.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.2e-217 760.4 690 59.4
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.7e-217 759.2 682 59.1
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 6.1e-217 758.1 680 59.0
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.3e-215 752.3 698 58.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.3e-214 750.4 684 59.6
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.8e-213 746.5 687 59.5
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 4.1e-213 745.3 685 57.7
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.5e-212 743.4 678 60.2
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 3.4e-212 742.3 683 58.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.2e-211 739.6 697 58.4
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.2e-210 735.7 691 56.9
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.0e-208 730.7 691 58.6
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 4.3e-207 725.3 680 56.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 9.7e-207 724.2 681 58.6
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.2e-206 723.0 692 57.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.8e-205 719.9 680 56.6
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.3e-203 713.8 687 56.0
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 2.9e-203 712.6 688 56.4
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 3.8e-203 712.2 687 55.6
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 3.8e-203 712.2 717 54.0
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 5.0e-203 711.8 681 56.4
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 6.5e-203 711.4 705 56.3
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.1e-202 710.7 688 54.9
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.1e-202 710.7 677 55.7
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 2.1e-201 706.4 683 56.5
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 4.7e-201 705.3 703 54.3
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 7.9e-201 704.5 679 55.7
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 6.7e-200 701.4 682 56.3
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.1e-199 700.7 682 56.0
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.6e-199 699.5 682 57.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 9.7e-199 697.6 682 56.6
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.7e-198 696.8 684 56.0
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.7e-198 695.7 683 54.9
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 4.1e-197 692.2 682 55.9
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 3.5e-196 689.1 705 54.2
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.5e-196 688.7 683 54.6
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.3e-195 687.2 682 56.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.3e-195 687.2 685 53.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.5e-194 683.7 671 53.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.7e-193 679.5 735 51.4
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.0e-191 673.3 491 68.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 9.7e-191 671.0 691 55.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.7e-190 670.2 670 55.2
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.6e-188 662.9 697 53.7
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.5e-186 655.2 696 52.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.1e-185 653.3 636 55.7
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.3e-182 644.0 641 55.9
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 8.5e-179 631.3 688 51.3
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.1e-178 630.9 674 51.3
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.0e-176 624.4 685 50.5
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.3e-176 623.2 604 55.6
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 9.1e-173 611.3 506 62.6
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.2e-172 610.9 606 55.8
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.7e-171 607.1 685 50.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.0e-168 597.8 683 51.0
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 2.3e-168 596.7 609 54.4
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 4.9e-166 589.0 618 52.4
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 4.9e-166 589.0 677 49.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 2.7e-164 583.2 717 47.3
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 5.9e-164 582.0 681 48.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 3.6e-161 572.8 586 54.8
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 4.3e-154 549.3 641 49.3
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.6e-145 520.8 664 47.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 2.6e-143 513.5 356 71.6
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 9.9e-127 458.4 694 43.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.1e-122 444.9 618 44.2
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 5.6e-122 442.6 487 46.8
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.6e-121 441.0 707 40.5
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.9e-118 429.5 303 67.3
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 6.3e-105 386.0 285 63.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.5e-61 241.1 222 54.5
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.3e-43 181.4 304 44.1
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.6e-30 136.7 89 68.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.3e-29 134.0 89 67.4
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.8e-28 131.3 87 67.8
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.3e-27 128.3 85 67.1
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 3.8e-25 120.9 238 35.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.6e-20 104.4 69 63.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 8.9e-19 99.8 69 62.3
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.5e-18 99.0 182 37.4
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.6e-15 89.0 331 26.0
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.6e-13 80.5 68 54.4
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.4e-11 75.9 47 70.2
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.9e-10 69.7 64 53.1
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 6.7e-06 57.0 33 90.9


User provided reference genes

Program Settings