Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.6e-39 165.6 84 100.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.6e-39 165.6 84 100.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.9e-33 144.4 75 97.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 3.9e-33 144.4 75 97.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 3.9e-33 144.4 75 97.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 8.6e-33 143.3 75 96.0
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 8.6e-33 143.3 75 96.0
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.1e-32 142.9 75 96.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.5e-32 142.5 74 97.3
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.9e-32 142.1 75 94.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 1.2e-31 139.4 75 93.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.1e-30 134.8 75 90.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.7e-28 127.9 73 84.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.7e-28 127.9 73 84.9
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.7e-28 127.9 73 84.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 8.3e-28 126.7 74 82.4
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 8.3e-28 126.7 74 82.4
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 8.3e-28 126.7 73 83.6
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.9e-27 125.6 73 82.2
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.9e-27 125.6 74 81.1
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.2e-27 124.8 74 81.1
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 7.0e-27 123.6 74 78.4
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 9.2e-27 123.2 74 78.4
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 9.2e-27 123.2 74 79.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 9.2e-27 123.2 74 79.7
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.2e-26 122.9 74 79.7
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.2e-26 122.9 74 78.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.6e-26 122.5 74 77.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.6e-26 122.5 74 77.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 1.6e-26 122.5 74 77.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.6e-26 122.5 74 77.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 2.0e-26 122.1 74 77.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 2.0e-26 122.1 75 76.0
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.0e-26 122.1 75 76.0
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-26 122.1 74 75.7
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-26 122.1 74 75.7
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.0e-26 122.1 74 75.7
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.0e-26 122.1 74 78.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.7e-26 121.7 74 78.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 2.7e-26 121.7 74 75.7
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.7e-26 121.7 74 75.7
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 3.5e-26 121.3 74 77.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.5e-26 121.3 74 74.3
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.5e-26 121.3 74 77.0
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 3.5e-26 121.3 74 75.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 4.6e-26 120.9 74 75.7
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 4.6e-26 120.9 74 77.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 4.6e-26 120.9 74 74.3
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 6.0e-26 120.6 74 78.4
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 6.0e-26 120.6 74 74.3
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 6.0e-26 120.6 74 77.0
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 6.0e-26 120.6 73 79.5
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 7.8e-26 120.2 75 74.7
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 7.8e-26 120.2 74 75.7
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 7.8e-26 120.2 75 74.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 7.8e-26 120.2 74 77.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.0e-25 119.8 74 77.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 1.0e-25 119.8 74 75.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 75.7
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 75.7
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 75.7
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.3e-25 119.4 75 73.3
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 75.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 75.7
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.3e-25 119.4 74 77.0
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.7e-25 119.0 74 79.7
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.7e-25 119.0 74 79.7
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.7e-25 119.0 74 77.0
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 2.3e-25 118.6 74 75.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.3e-25 118.6 73 78.1
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 2.3e-25 118.6 74 78.4
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 2.3e-25 118.6 74 73.0
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.9e-25 117.9 74 75.7
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.9e-25 117.9 74 73.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 3.9e-25 117.9 74 74.3
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 3.9e-25 117.9 74 75.7
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 3.9e-25 117.9 73 76.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 5.0e-25 117.5 74 73.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 5.0e-25 117.5 74 73.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 5.0e-25 117.5 74 74.3
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.6e-25 117.1 88 69.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 6.6e-25 117.1 74 71.6
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 6.6e-25 117.1 74 74.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 6.6e-25 117.1 74 73.0
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 8.6e-25 116.7 73 75.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 8.6e-25 116.7 74 74.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.6e-25 116.7 77 72.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-24 115.9 75 70.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-24 115.9 77 74.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-24 115.9 77 74.0
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.5e-24 115.9 74 71.6
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.9e-24 115.5 74 70.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 2.5e-24 115.2 80 72.5
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 2.5e-24 115.2 74 74.3
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.5e-24 115.2 77 74.0
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.5e-24 115.2 74 73.0
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 3.3e-24 114.8 74 73.0
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 4.3e-24 114.4 74 71.6
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 5.6e-24 114.0 74 73.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 7.3e-24 113.6 74 73.0
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.3e-24 113.6 73 72.6
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.2e-23 112.8 74 71.6
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.2e-23 112.8 74 71.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 1.2e-23 112.8 76 73.7
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.2e-23 112.8 74 71.6
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.8e-23 111.7 75 72.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.6e-23 111.3 75 68.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 4.7e-23 110.9 76 71.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 4.7e-23 110.9 74 73.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 4.7e-23 110.9 74 70.3
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 8.1e-23 110.2 74 70.3
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.4e-22 109.4 74 67.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.8e-22 109.0 74 70.3
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.8e-22 109.0 74 68.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.3e-22 108.6 73 71.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.3e-22 108.6 74 66.2
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.1e-22 108.2 73 67.1
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 6.8e-22 107.1 75 62.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.2e-21 106.3 74 67.6
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 1.2e-21 106.3 74 68.9
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 7.5e-21 103.6 74 63.5
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.2e-20 102.1 73 68.5
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.4e-19 99.4 53 92.5
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 6.0e-18 94.0 100 51.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.1e-16 89.7 77 57.1
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 9.5e-16 86.7 75 57.3
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 2.0e-13 79.0 72 56.9
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 2.6e-13 78.6 52 69.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 3.4e-13 78.2 70 47.1
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 2.2e-12 75.5 77 45.5
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.3e-08 61.2 61 45.9
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.2e-06 54.3 32 75.0


User provided reference genes

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