Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16930 Arabidopsis lyrata HOM05D011930 ORTHO05D002806 4.6e-214 747.7 388 100.0
AT1G06910 Arabidopsis thaliana HOM05D011930 ORTHO05D002806 9.0e-186 653.7 391 88.2
Carub.0001s0620 Capsella rubella HOM05D011930 ORTHO05D002806 1.3e-152 543.5 391 75.2
CARHR006580 Cardamine hirsuta HOM05D011930 ORTHO05D002806 6.1e-150 534.6 387 75.5
Thhalv10007960m.g Eutrema salsugineum HOM05D011930 ORTHO05D002806 4.1e-130 468.8 391 67.8
BcaC07g42548 Brassica carinata HOM05D011930 ORTHO05D002806 1.1e-125 454.1 387 67.4
BcaC07g42039 Brassica carinata HOM05D011930 ORTHO05D002806 2.3e-120 436.4 388 65.5
C08p50930 Brassica napus HOM05D011930 ORTHO05D002806 2.3e-120 436.4 388 65.5
BolC8t52621H Brassica oleracea HOM05D011930 ORTHO05D002806 2.3e-120 436.4 388 65.5
BraA09t42009Z Brassica rapa HOM05D011930 ORTHO05D002806 6.2e-118 428.3 388 64.9
A09p66700 Brassica napus HOM05D011930 ORTHO05D002806 3.1e-117 426.0 388 64.7
Aa31LG1G7980 Aethionema arabicum HOM05D011930 ORTHO05D002806 4.2e-82 309.3 482 42.7
Sp1g05620 Schrenkiella parvula HOM05D011930 ORTHO05D002806 1.1e-79 301.2 244 72.1
BcaC07g42544 Brassica carinata HOM05D011930 ORTHO05D002806 1.8e-61 240.7 221 62.9
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 1.8e-21 107.8 452 28.1
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 3.2e-21 107.1 450 28.7
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 1.2e-20 105.1 426 26.8
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 2.0e-20 104.4 406 27.1
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 7.8e-20 102.4 504 28.6
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 8.6e-19 99.0 479 27.3
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 4.3e-18 96.7 426 27.9
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 9.5e-18 95.5 426 27.5
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 9.5e-18 95.5 432 27.5
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 1.2e-17 95.1 443 28.9
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 1.6e-17 94.7 446 27.6
BolC5t34879H Brassica oleracea HOM05D009360 ORTHO05D002806 3.1e-16 90.5 377 26.5
C05p62230 Brassica napus HOM05D009360 ORTHO05D002806 1.5e-15 88.2 377 26.3
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 1.5e-15 88.2 130 45.4
A05p42550 Brassica napus HOM05D009360 ORTHO05D002806 4.4e-15 86.7 386 28.0
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 4.4e-15 86.7 459 26.6
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 5.8e-15 86.3 506 27.1
BraA05t22997Z Brassica rapa HOM05D009360 ORTHO05D002806 7.5e-15 85.9 391 27.4
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 2.2e-14 84.3 437 27.5
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 3.7e-14 83.6 436 28.7
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 6.4e-14 82.8 468 24.8
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 1.9e-13 81.3 430 28.6
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 5.4e-13 79.7 372 26.1
AL1G27830 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 1.2e-12 78.6 374 27.0
AT1G15720 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 1.6e-12 78.2 381 25.2
BcaC05g29987 Brassica carinata HOM05D009360 ORTHO05D002806 2.0e-12 77.8 383 26.9
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 2.0e-12 77.8 448 27.2
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 2.0e-12 77.8 134 41.0
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 2.7e-12 77.4 440 27.0
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 3.5e-12 77.0 445 26.7
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 6.0e-12 76.3 415 25.1
Carub.0001s1549 Capsella rubella HOM05D009360 ORTHO05D002806 6.0e-12 76.3 401 25.4
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 6.0e-12 76.3 519 24.5
SHI19247 Sapria himalayana HOM05D003468 ORTHO05D002806 6.0e-12 76.3 428 26.4
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 7.8e-12 75.9 405 24.7
Ciclev10028601m.g Citrus clementina HOM05D003468 ORTHO05D002806 7.8e-12 75.9 241 31.5
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 1.0e-11 75.5 460 23.9
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 1.0e-11 75.5 384 27.3
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 1.3e-11 75.1 405 24.7
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 1.3e-11 75.1 120 42.5
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 3.0e-11 73.9 186 33.3
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 3.0e-11 73.9 448 26.1
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 3.0e-11 73.9 411 24.8
THA.LOC104810722 Tarenaya hassleriana HOM05D009360 ORTHO05D002806 3.0e-11 73.9 389 26.5
Thecc.06G237700 Theobroma cacao HOM05D003468 ORTHO05D002806 3.9e-11 73.6 463 25.1
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 5.0e-11 73.2 457 25.4
Gohir.D10G008000 Gossypium hirsutum HOM05D003468 ORTHO05D002806 5.0e-11 73.2 107 43.9
Nitab4.5_0002759g0060 Nicotiana tabacum HOM05D003468 ORTHO05D002806 5.0e-11 73.2 448 26.6
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 6.6e-11 72.8 474 25.1
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 6.6e-11 72.8 133 36.1
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 6.6e-11 72.8 448 26.1
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 6.6e-11 72.8 442 27.8
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 8.6e-11 72.4 408 25.7
Cpa.g.sc85.113 Carica papaya HOM05D003468 ORTHO05D002806 8.6e-11 72.4 178 32.6
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 1.1e-10 72.0 118 44.1
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 1.5e-10 71.6 109 41.3
CARHR016220 Cardamine hirsuta HOM05D009360 ORTHO05D002806 1.9e-10 71.2 374 25.4
Gohir.A10G008200 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.9e-10 71.2 132 40.9
Gorai.011G008700 Gossypium raimondii HOM05D003468 ORTHO05D002806 1.9e-10 71.2 107 43.0
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 3.3e-10 70.5 440 25.9
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 3.3e-10 70.5 109 42.2
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 4.3e-10 70.1 430 26.3
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 7.3e-10 69.3 133 41.4
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 9.5e-10 68.9 138 37.0
Thhalv10022421m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 9.5e-10 68.9 368 25.3
Gohir.A09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 9.5e-10 68.9 135 39.3
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 1.2e-09 68.6 514 25.1
Peaxi162Scf00390g00336 Petunia axillaris HOM05D003468 ORTHO05D002806 1.2e-09 68.6 377 26.5
A10p05460 Brassica napus HOM05D011930 ORTHO05D002806 1.6e-09 68.2 72 59.7
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 1.6e-09 68.2 436 26.1
CiPaw.13G064100 Carya illinoinensis HOM05D003468 ORTHO05D002806 2.8e-09 67.4 104 44.2
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 2.8e-09 67.4 130 38.5
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 2.8e-09 67.4 503 23.7
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 3.6e-09 67.0 409 24.2
COL.COLO4_33672 Corchorus olitorius HOM05D003468 ORTHO05D002806 3.6e-09 67.0 134 35.1
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 3.6e-09 67.0 431 25.5
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 3.6e-09 67.0 433 26.8
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 4.7e-09 66.6 433 26.3
BraA10t43633Z Brassica rapa HOM05D009360 ORTHO05D002806 4.7e-09 66.6 403 24.8
Gohir.D09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 6.2e-09 66.2 135 37.0
Nitab4.5_0002091g0050 Nicotiana tabacum HOM05D003468 ORTHO05D002806 8.1e-09 65.9 412 27.9
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 8.1e-09 65.9 413 26.6
Thhalv10013531m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 1.1e-08 65.5 428 24.8
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 1.1e-08 65.5 117 41.0
Gorai.006G101500 Gossypium raimondii HOM05D003468 ORTHO05D002806 1.1e-08 65.5 135 37.0
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 1.1e-08 65.5 446 22.6
Thecc.01G157300 Theobroma cacao HOM05D003468 ORTHO05D002806 1.1e-08 65.5 152 32.9
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 1.4e-08 65.1 139 33.8
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 1.4e-08 65.1 153 35.9
Sc16g0010510 Simmondsia chinensis HOM05D003468 ORTHO05D002806 1.8e-08 64.7 132 33.3
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 2.3e-08 64.3 554 22.6
TPR.G5928 Trifolium pratense HOM05D003468 ORTHO05D002806 3.1e-08 63.9 421 24.0
C09p50220 Brassica napus HOM05D000295 ORTHO05D000188 4.0e-08 63.5 393 24.2
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.0e-08 63.5 118 41.5
Thecc.01G027400 Theobroma cacao HOM05D003468 ORTHO05D002806 4.0e-08 63.5 152 32.9
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.8e-08 62.8 118 40.7
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 6.8e-08 62.8 141 37.6
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 8.9e-08 62.4 496 23.8
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 1.2e-07 62.0 457 25.8
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.5e-07 61.6 130 32.3
Lsat_1_v5_gn_8_109320 Lactuca sativa HOM05D003468 ORTHO05D002806 1.5e-07 61.6 350 25.4
Aa31LG1G28610 Aethionema arabicum HOM05D009360 ORTHO05D002806 2.0e-07 61.2 135 30.4
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 2.6e-07 60.8 510 24.5
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 4.4e-07 60.1 130 32.3
Oeu058241.1 Olea europaea HOM05D003468 ORTHO05D002806 5.8e-07 59.7 400 25.2
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 7.5e-07 59.3 105 31.4
A10p15910 Brassica napus HOM05D000295 ORTHO05D000188 9.8e-07 58.9 393 23.2
COL.COLO4_33674 Corchorus olitorius HOM05D003468 ORTHO05D002806 9.8e-07 58.9 142 29.6
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 1.7e-06 58.2 532 23.5
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.7e-06 58.2 116 37.1
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.7e-06 58.2 127 37.0
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 1.7e-06 58.2 125 38.4
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 1.7e-06 58.2 452 23.7
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.2e-06 57.8 110 38.2
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.2e-06 57.8 114 37.7
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 2.9e-06 57.4 188 28.7
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 2.9e-06 57.4 394 26.1
Lj1g0000690 Lotus japonicus HOM05D003468 ORTHO05D002806 2.9e-06 57.4 374 27.5
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 2.9e-06 57.4 399 25.3
Ah.06g195340 Amaranthus hybridus HOM05D003468 ORTHO05D002806 3.7e-06 57.0 130 30.8
DCAR_024874 Daucus carota HOM05D003468 ORTHO05D002806 3.7e-06 57.0 173 32.4
DCAR_005491 Daucus carota HOM05D003468 ORTHO05D002806 4.9e-06 56.6 101 39.6
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 6.4e-06 56.2 195 31.3
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 8.3e-06 55.8 347 24.8


User provided reference genes

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