Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.4e-26 121.3 57 100.0
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.4e-26 121.3 57 100.0
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 4.0e-26 120.6 57 98.2
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 2.6e-25 117.9 57 94.7
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 2.5e-23 111.3 57 86.0
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 3.2e-23 110.9 57 86.0
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 7.1e-23 109.8 53 92.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 3.5e-22 107.5 56 82.1
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 7.9e-22 106.3 53 88.7
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 7.9e-22 106.3 53 88.7
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 7.9e-22 106.3 53 88.7
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 7.9e-22 106.3 53 88.7
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.0e-21 105.9 53 86.8
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 1.8e-21 105.1 56 80.4
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.0e-21 104.4 57 78.9
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.0e-21 104.4 57 78.9
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 3.9e-21 104.0 53 86.8
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 3.9e-21 104.0 53 86.8
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 6.7e-21 103.2 55 81.8
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 6.7e-21 103.2 57 78.9
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.9e-20 101.7 55 78.2
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 2.5e-20 101.3 56 76.8
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.3e-20 100.9 55 80.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 4.3e-20 100.5 55 80.0
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 5.7e-20 100.1 57 77.2
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.7e-20 100.1 55 78.2
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 5.7e-20 100.1 53 81.1
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 5.7e-20 100.1 57 77.2
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 5.7e-20 100.1 55 78.2
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 81.1
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.7e-20 99.4 53 81.1
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 9.7e-20 99.4 53 83.0
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 1.3e-19 99.0 55 80.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.6e-19 98.6 55 76.4
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.7e-19 97.4 55 80.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.7e-19 97.4 56 76.8
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.8e-19 97.1 53 81.1
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.8e-19 97.1 54 77.8
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.3e-19 96.7 53 75.5
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 6.3e-19 96.7 54 77.8
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 6.3e-19 96.7 55 76.4
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 81.8
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 74.5
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 53 79.2
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 76.4
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 76.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-18 95.9 57 78.9
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.1e-18 95.9 55 76.4
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 1.8e-18 95.1 53 75.5
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.8e-18 95.1 53 75.5
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.4e-18 94.7 56 76.8
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.4e-18 94.7 55 78.2
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.1e-18 94.4 53 75.5
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 5.3e-18 93.6 49 83.7
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 74.5
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 6.9e-18 93.2 50 82.0
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 6.9e-18 93.2 53 79.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 71.7
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 9.0e-18 92.8 55 70.9
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.5e-17 92.0 55 72.7
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 2.0e-17 91.7 54 70.4
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.6e-17 91.3 50 86.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-17 90.9 55 72.7
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 7.6e-17 89.7 46 82.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 7.6e-17 89.7 52 71.2
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.6e-17 89.7 53 71.7
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.0e-16 89.4 52 73.1
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.0e-16 89.4 54 70.4
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.0e-16 89.4 52 75.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 75.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.8e-16 87.4 46 82.6
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.0e-16 87.0 46 82.6
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.0e-16 87.0 46 82.6
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 8.5e-16 86.3 55 76.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 1.9e-15 85.1 52 73.1
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.5e-15 84.7 55 67.3
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 4.2e-15 84.0 55 72.7
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 7.2e-15 83.2 87 51.7
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-14 82.4 56 67.9
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 1.6e-14 82.0 55 69.1
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 1.6e-14 82.0 55 60.0
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.1e-14 81.6 55 69.1
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.1e-14 81.6 55 69.1
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.6e-14 80.9 53 71.7
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.6e-14 80.9 56 64.3
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 6.1e-14 80.1 55 67.3
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 6.1e-14 80.1 51 74.5
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 3.0e-13 77.8 47 76.6
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 6.7e-13 76.6 55 61.8
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 8.8e-13 76.3 55 65.5
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.1e-12 75.9 55 63.6
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 1.9e-12 75.1 50 64.0
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 3.3e-12 74.3 47 74.5
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.3e-11 72.4 92 43.5
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.8e-11 70.5 55 58.2
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 4.8e-11 70.5 54 55.6
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.8e-10 68.6 31 96.8
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 4.1e-10 67.4 55 60.0
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.1e-10 66.2 31 93.5
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.4e-09 64.3 34 82.4
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 5.9e-09 63.5 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.0e-08 62.8 47 66.0
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 6.5e-08 60.1 28 92.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 6.5e-08 60.1 35 77.1
BolC4t25707H Brassica oleracea HOM05D040072 ORTHO05D033253 2.5e-07 58.2 57 54.4
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.2e-07 56.6 79 48.1
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.2e-07 56.6 79 48.1
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 7.2e-07 56.6 31 77.4
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.2e-07 56.6 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.1e-06 55.1 36 63.9
A04p07600 Brassica napus HOM05D040072 ORTHO05D033253 2.7e-06 54.7 57 54.4
BraA04t16452Z Brassica rapa HOM05D040072 ORTHO05D033253 2.7e-06 54.7 57 54.4
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.9e-06 53.1 31 67.7


User provided reference genes

Program Settings