Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.2e-39 166.0 82 100.0
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 3.3e-29 131.3 80 80.0
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.8e-28 128.3 80 76.2
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 2.8e-28 128.3 80 76.2
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.8e-28 128.3 80 76.2
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.8e-27 125.6 80 76.2
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 2.4e-27 125.2 80 75.0
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 5.3e-27 124.0 80 75.0
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 9.0e-27 123.2 80 73.8
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 3.4e-26 121.3 80 71.2
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 9.9e-26 119.8 80 73.8
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.9e-25 118.2 80 70.0
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.9e-25 118.2 80 72.5
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 3.2e-24 114.8 80 68.8
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.2e-23 112.8 81 67.9
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.7e-23 111.7 81 65.4
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.7e-23 111.7 81 65.4
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 2.7e-23 111.7 80 70.0
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 6.0e-23 110.5 79 67.1
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 7.9e-23 110.2 81 64.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.9e-23 110.2 81 64.2
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.0e-22 109.8 81 63.0
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 2.3e-22 108.6 80 63.8
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.1e-22 107.5 74 70.3
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 5.1e-22 107.5 81 61.7
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 5.1e-22 107.5 74 68.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.1e-21 106.3 74 67.6
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 1.1e-21 106.3 77 66.2
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.5e-21 105.9 81 61.7
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.5e-21 105.1 74 67.6
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 4.3e-21 104.4 75 69.3
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 4.3e-21 104.4 78 67.9
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 5.6e-21 104.0 74 66.2
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 5.6e-21 104.0 74 67.6
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 1.3e-20 102.8 74 64.9
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.3e-20 102.8 80 63.8
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.6e-20 102.4 81 61.7
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.6e-20 102.4 74 67.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.6e-20 102.4 74 64.9
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 2.1e-20 102.1 74 64.9
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.1e-20 102.1 81 59.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.1e-20 102.1 77 58.4
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 2.1e-20 102.1 74 64.9
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 2.8e-20 101.7 74 66.2
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.8e-20 101.7 73 65.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 3.7e-20 101.3 76 63.2
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 3.7e-20 101.3 77 63.6
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 4.8e-20 100.9 81 61.7
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 4.8e-20 100.9 78 61.5
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.8e-20 100.9 79 62.0
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.1e-19 99.8 77 62.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.1e-19 99.8 74 66.2
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.1e-19 99.8 80 60.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.1e-19 99.8 73 65.8
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.4e-19 99.4 81 58.0
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.4e-19 99.4 81 59.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.4e-19 99.4 77 63.6
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.4e-19 99.4 75 62.7
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.4e-19 99.4 79 62.0
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.4e-19 99.4 71 63.4
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.8e-19 99.0 81 61.7
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.4e-19 98.6 78 62.8
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 2.4e-19 98.6 78 62.8
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.4e-19 98.6 78 62.8
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 2.4e-19 98.6 71 63.4
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 2.4e-19 98.6 73 68.5
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 2.4e-19 98.6 77 62.3
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 3.1e-19 98.2 74 63.5
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 3.1e-19 98.2 74 60.8
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 4.0e-19 97.8 81 61.7
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 4.0e-19 97.8 80 60.0
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 5.3e-19 97.4 71 63.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 5.3e-19 97.4 71 63.4
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 9.0e-19 96.7 81 59.3
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 9.0e-19 96.7 75 62.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.2e-18 96.3 78 60.3
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.5e-18 95.9 78 61.5
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.5e-18 95.9 77 58.4
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.5e-18 95.9 81 54.3
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.5e-18 95.9 81 54.3
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 2.6e-18 95.1 78 61.5
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.6e-18 95.1 74 56.8
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.6e-18 95.1 75 62.7
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 3.4e-18 94.7 78 62.8
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 4.5e-18 94.4 74 62.2
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.5e-18 94.4 81 60.5
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 5.8e-18 94.0 79 59.5
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 5.8e-18 94.0 81 58.0
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 7.6e-18 93.6 78 60.3
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.6e-18 93.6 81 59.3
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.0e-17 93.2 82 56.1
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.2e-17 92.0 74 56.8
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 2.2e-17 92.0 75 61.3
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 3.8e-17 91.3 80 58.8
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 3.8e-17 91.3 80 58.8
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 4.9e-17 90.9 74 60.8
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 6.5e-17 90.5 74 62.2
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.1e-16 89.7 80 57.5
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.9e-16 89.0 77 54.5
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.9e-16 89.0 77 54.5
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 3.2e-16 88.2 79 53.2
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 5.5e-16 87.4 74 56.8
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 5.5e-16 87.4 70 61.4
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.1e-15 85.5 74 60.8
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 2.1e-15 85.5 74 59.5
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.5e-15 84.7 78 55.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-13 79.7 75 53.3
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.1e-13 79.7 75 53.3
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.3e-13 78.2 77 49.4
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-11 72.4 78 52.6
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 1.2e-10 69.7 80 46.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.1e-08 63.2 78 44.9
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.4e-08 62.8 49 65.3
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.6e-07 57.8 63 46.0
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.8e-06 55.8 64 48.4
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.8e-06 55.8 54 50.0
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 5.1e-06 54.3 33 72.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 5.1e-06 54.3 33 72.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 5.1e-06 54.3 33 72.7


User provided reference genes

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