Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 5.3e-105 384.4 201 100.0
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 4.5e-72 275.0 200 77.5
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.6e-45 186.8 202 58.9
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 3.6e-45 185.7 156 66.0
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 2.1e-40 169.9 136 70.6
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 1.0e-39 167.5 130 70.8
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 1.7e-39 166.8 125 74.4
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 2.3e-39 166.4 130 70.0
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 8.6e-39 164.5 133 67.7
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 1.1e-38 164.1 130 69.2
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 3.3e-38 162.5 132 69.7
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 9.5e-38 161.0 127 67.7
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 9.5e-38 161.0 127 67.7
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 4.7e-37 158.7 132 68.2
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 1.1e-36 157.5 125 67.2
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 9.9e-35 151.0 124 66.1
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 9.9e-35 151.0 124 66.1
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 5.4e-33 145.2 162 52.5
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 7.1e-25 118.2 128 46.9
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 3.9e-23 112.5 129 45.7
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 3.3e-22 109.4 121 48.8
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 4.3e-22 109.0 122 46.7
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 4.7e-21 105.5 122 43.4
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 8.1e-21 104.8 167 39.5
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 1.8e-20 103.6 128 45.3
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 4.0e-20 102.4 107 47.7
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 4.0e-20 102.4 118 47.5
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 6.9e-20 101.7 106 48.1
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 9.0e-20 101.3 118 46.6
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 4.4e-19 99.0 100 53.0
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 5.8e-19 98.6 112 45.5
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 1.3e-18 97.4 117 41.0
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 1.3e-18 97.4 126 43.7
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 2.2e-18 96.7 100 51.0
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 8.4e-18 94.7 97 46.4
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 1.1e-17 94.4 102 44.1
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 1.9e-17 93.6 101 45.5
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 1.9e-17 93.6 97 45.4
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 2.4e-17 93.2 97 45.4
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 2.4e-17 93.2 97 45.4
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 3.2e-17 92.8 97 45.4
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 3.2e-17 92.8 110 40.9
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 5.4e-17 92.0 97 44.3
BcaC07g42071 Brassica carinata HOM05D006335 ORTHO05D007617 5.4e-17 92.0 76 64.5
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 5.4e-17 92.0 103 42.7
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 7.1e-17 91.7 110 43.6
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 7.1e-17 91.7 110 42.7
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 9.3e-17 91.3 101 45.5
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 1.2e-16 90.9 149 34.9
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 1.6e-16 90.5 136 38.2
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 1.6e-16 90.5 101 45.5
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 2.1e-16 90.1 119 41.2
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.5e-16 89.4 110 41.8
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 3.5e-16 89.4 97 42.3
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 4.6e-16 89.0 128 43.0
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 6.0e-16 88.6 94 46.8
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 1.0e-15 87.8 101 41.6
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 1.0e-15 87.8 117 40.2
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.3e-15 87.4 184 33.7
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 1.3e-15 87.4 118 37.3
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 1.3e-15 87.4 105 43.8
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 2.3e-15 86.7 121 40.5
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 3.0e-15 86.3 189 31.7
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 3.9e-15 85.9 175 30.9
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 5.1e-15 85.5 155 38.1
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 8.7e-15 84.7 175 30.3
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 1.1e-14 84.3 100 42.0
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.5e-14 84.0 141 38.3
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.5e-14 83.2 112 39.3
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 2.5e-14 83.2 102 41.2
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 4.3e-14 82.4 184 27.7
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 7.3e-14 81.6 131 39.7
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 9.6e-14 81.3 101 42.6
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 9.6e-14 81.3 110 34.5
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 3.6e-13 79.3 109 38.5
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 6.2e-13 78.6 115 38.3
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.4e-12 77.4 189 31.2
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 3.1e-12 76.3 102 43.1
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 4.0e-12 75.9 108 38.0
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 4.0e-12 75.9 141 39.7
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 4.0e-12 75.9 100 44.0
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 6.9e-12 75.1 99 40.4
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 9.0e-12 74.7 101 39.6
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 1.5e-11 73.9 197 27.9
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 2.0e-11 73.6 98 39.8
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 2.6e-11 73.2 151 34.4
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 3.4e-11 72.8 179 29.6
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 5.8e-11 72.0 156 31.4
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 7.6e-11 71.6 102 37.3
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 9.9e-11 71.2 180 32.8
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.7e-10 70.5 102 40.2
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 3.8e-10 69.3 130 37.7
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 8.4e-10 68.2 179 30.7
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 1.1e-09 67.8 130 36.2
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 1.9e-09 67.0 101 38.6
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 3.2e-09 66.2 145 33.1
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 3.2e-09 66.2 131 32.8
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.4e-09 65.5 74 43.2
Os03g0308700 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 5.4e-09 65.5 139 32.4
Hund03123 Selenicereus undatus HOM05D006335 ORTHO05D007617 5.4e-09 65.5 162 31.5
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.2e-08 64.3 129 37.2
Zm00001eb014800 Zea mays HOM05D006335 ORTHO05D007617 3.5e-08 62.8 166 30.7
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 4.6e-08 62.4 94 40.4
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 6.0e-08 62.0 97 35.1
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.0e-07 61.2 101 35.6
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 2.3e-07 60.1 86 39.5
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 5.1e-07 58.9 73 46.6
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 1.1e-06 57.8 147 29.3
PSO210G6959 Papaver somniferum HOM05D042607 ORTHO05D007617 1.9e-06 57.0 184 28.8
unitig_46.g18233 Utricularia gibba HOM05D006335 ORTHO05D007617 1.9e-06 57.0 114 34.2
EL10Ac3g05494 Beta vulgaris HOM05D006335 ORTHO05D007617 4.3e-06 55.8 169 29.6


User provided reference genes

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