Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.5e-43 179.1 89 100.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.7e-18 95.9 96 55.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-12 76.3 70 60.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.0e-12 75.1 90 50.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.0e-12 75.1 83 50.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.0e-12 75.1 90 47.8
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.0e-12 74.7 82 51.2
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.0e-12 74.7 82 51.2
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.0e-12 74.7 82 51.2
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-11 72.4 82 50.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 7.5e-11 70.5 84 50.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.7e-10 69.3 80 50.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-10 69.3 80 51.2
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.7e-10 68.2 82 46.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-10 67.8 82 48.8
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.9e-10 67.8 80 51.2
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 4.9e-10 67.8 82 47.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 6.3e-10 67.4 80 47.5
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 8.3e-10 67.0 82 46.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.1e-09 66.6 82 47.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.4e-09 65.5 82 45.1
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.1e-09 65.1 82 45.1
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.1e-09 64.7 82 47.6
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.4e-09 64.3 82 45.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 9.2e-09 63.5 82 45.1
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 9.2e-09 63.5 82 42.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-08 63.2 80 47.5
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.2e-08 63.2 66 50.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.6e-08 62.8 82 42.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.6e-08 62.8 84 42.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 45.1
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 42.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 42.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 42.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 42.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-08 62.0 82 43.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.5e-08 61.6 82 43.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.5e-08 61.6 84 42.9
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 5.9e-08 60.8 82 43.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.9e-08 60.8 82 45.1
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 43.9
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 43.9
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 43.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 42.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 43.9
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 42.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.0e-07 60.1 82 41.5
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.3e-07 59.7 82 41.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-07 59.3 81 42.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.7e-07 59.3 82 42.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-07 58.9 83 41.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.9e-07 58.5 82 42.7
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.9e-07 58.5 83 41.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.9e-07 58.5 82 41.5
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 2.9e-07 58.5 80 43.8
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.9e-07 58.2 80 42.5
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.0e-07 57.8 80 42.5
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 6.6e-07 57.4 79 41.8
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 6.6e-07 57.4 82 40.2
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-07 57.4 91 39.6
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-07 57.4 91 39.6
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 6.6e-07 57.4 82 41.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.6e-07 57.0 108 37.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.5e-06 56.2 80 38.8
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-06 56.2 80 42.5
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-06 56.2 79 41.8
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.5e-06 56.2 82 39.0
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.5e-06 56.2 81 39.5
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.5e-06 56.2 82 39.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 39.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 40.2
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 40.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 40.2
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 39.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.9e-06 55.8 82 40.2
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.5e-06 55.5 80 40.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.5e-06 55.5 80 40.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.5e-06 55.5 80 40.0
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.5e-06 55.5 82 40.2
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.5e-06 55.5 82 37.8
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.5e-06 55.5 82 37.8
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.5e-06 55.5 82 39.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.3e-06 55.1 82 40.2
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.6e-06 54.3 82 41.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.6e-06 54.3 39 66.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.3e-06 53.9 76 40.8
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.3e-06 53.9 76 40.8
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 7.3e-06 53.9 76 40.8
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 7.3e-06 53.9 82 36.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 9.5e-06 53.5 80 41.2
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.5e-06 53.5 82 37.8


User provided reference genes

Program Settings