Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.7e-33 145.6 84 100.0
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 9.8e-29 129.8 79 96.2
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 6.2e-23 110.5 79 84.8
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.2e-21 106.3 82 80.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 4.4e-21 104.4 82 80.5
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 9.9e-21 103.2 77 79.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 9.9e-21 103.2 77 79.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.3e-20 102.8 77 77.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.3e-20 102.8 77 77.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.3e-20 102.8 77 77.9
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.2e-20 102.1 82 78.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.2e-20 102.1 82 78.0
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 2.9e-20 101.7 79 79.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.9e-20 101.7 68 80.9
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 6.4e-20 100.5 81 75.3
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.4e-19 98.6 79 75.9
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 7.1e-19 97.1 80 77.5
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.5e-18 94.7 76 73.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.6e-18 94.4 68 73.5
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.6e-18 94.4 68 73.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.9e-17 91.3 66 74.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 6.6e-17 90.5 83 67.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.3e-16 88.2 81 70.4
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.8e-14 82.4 74 62.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 8.9e-14 80.1 65 63.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.0e-13 79.0 79 58.2
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.4e-13 78.2 65 66.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 4.4e-13 77.8 64 68.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 4.4e-13 77.8 79 63.3
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.8e-13 77.4 78 61.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 7.6e-13 77.0 65 64.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.3e-12 76.3 83 59.0
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.7e-12 75.9 80 57.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.2e-12 75.5 68 61.8
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-12 75.1 79 54.4
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.9e-12 75.1 76 59.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.8e-12 74.7 65 63.1
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 4.9e-12 74.3 77 61.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 4.9e-12 74.3 66 63.6
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 6.4e-12 73.9 84 54.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 6.4e-12 73.9 77 61.0
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.4e-12 73.9 66 60.6
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 6.4e-12 73.9 69 62.3
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 6.4e-12 73.9 66 62.1
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 8.4e-12 73.6 56 78.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 8.4e-12 73.6 66 62.1
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-11 73.2 82 57.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.4e-11 72.8 76 57.9
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-11 72.8 80 55.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.9e-11 72.4 75 56.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.4e-11 72.0 87 52.9
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.2e-11 71.6 67 59.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 3.2e-11 71.6 73 57.5
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.1e-11 71.2 77 54.5
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 4.1e-11 71.2 76 56.6
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.4e-11 70.9 82 56.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 5.4e-11 70.9 65 61.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 7.1e-11 70.5 84 56.0
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.1e-11 70.5 74 59.5
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.1e-11 70.5 74 59.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 7.1e-11 70.5 66 59.1
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.2e-11 70.1 82 56.1
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 9.2e-11 70.1 66 57.6
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 9.2e-11 70.1 63 61.9
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 9.2e-11 70.1 75 58.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.2e-10 69.7 76 56.6
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.6e-10 69.3 67 56.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.1e-10 68.9 76 59.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.7e-10 68.6 75 56.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-10 68.6 67 56.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.5e-10 68.2 73 53.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.5e-10 68.2 73 53.4
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.5e-10 68.2 75 57.3
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.6e-10 67.8 78 56.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.6e-10 67.8 72 56.9
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 6.0e-10 67.4 64 60.9
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 6.0e-10 67.4 75 54.7
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.0e-10 67.4 69 59.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 7.8e-10 67.0 66 60.6
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.8e-10 67.0 67 55.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.8e-10 67.0 67 55.2
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-09 66.6 65 58.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.0e-09 66.6 79 54.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.3e-09 66.2 76 52.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.3e-09 66.2 67 53.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.3e-09 66.2 67 59.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.3e-09 66.2 73 56.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 74 55.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 75 56.0
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 64 59.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.7e-09 65.9 79 54.4
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.7e-09 65.9 74 58.1
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-09 65.9 69 58.0
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.3e-09 65.5 74 54.1
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.3e-09 65.5 79 54.4
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.9e-09 64.7 66 57.6
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.1e-09 64.3 63 61.9
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 5.1e-09 64.3 77 54.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.1e-09 64.3 81 53.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.1e-09 64.3 81 53.1
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 5.1e-09 64.3 77 54.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 6.6e-09 63.9 80 55.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 6.6e-09 63.9 75 52.0
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.6e-09 63.9 65 58.5
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.7e-09 63.5 75 54.7
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.9e-08 62.4 82 51.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.9e-08 62.4 69 53.6
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-08 62.0 75 53.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.3e-08 61.6 59 54.2
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 3.3e-08 61.6 66 54.5
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.3e-08 61.2 77 51.9
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.3e-08 61.2 68 51.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.6e-08 60.8 78 50.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.3e-08 60.5 74 51.4
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.3e-08 60.5 80 55.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-07 59.7 75 50.7
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.2e-07 59.7 81 49.4
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-07 59.3 64 57.8
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-07 58.9 55 61.8
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.1e-07 58.9 80 47.5
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.8e-07 58.5 68 47.1
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.6e-07 58.2 65 55.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.6e-07 58.2 81 46.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.7e-07 57.8 66 53.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 8.1e-07 57.0 63 54.0
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 8.1e-07 57.0 69 50.7
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-06 56.6 69 52.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.1e-06 56.6 81 49.4
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.4e-06 56.2 66 56.1
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.4e-06 56.2 80 47.5
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.8e-06 55.8 72 51.4
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.8e-06 55.8 81 49.4
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.4e-06 55.5 65 53.8
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.4e-06 55.5 58 53.4
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 2.4e-06 55.5 66 50.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 3.1e-06 55.1 56 58.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 3.1e-06 55.1 81 44.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.0e-06 54.7 78 47.4
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 4.0e-06 54.7 58 55.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 6.9e-06 53.9 84 48.8
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 6.9e-06 53.9 66 48.5
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 9.0e-06 53.5 81 50.6


User provided reference genes

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