Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 8.9e-140 500.4 270 100.0
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 4.4e-123 444.9 270 88.5
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 1.7e-111 406.4 271 76.0
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 2.6e-91 339.3 279 67.4
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 5.9e-83 311.6 274 62.4
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 1.8e-79 300.1 279 63.4
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 1.8e-79 300.1 279 63.4
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 2.5e-78 296.2 279 62.7
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 1.3e-77 293.9 274 62.8
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 4.8e-77 292.0 278 64.7
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 4.8e-77 292.0 278 64.7
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 5.3e-76 288.5 272 59.6
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 4.5e-75 285.4 270 58.9
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 6.5e-58 228.4 265 52.5
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 6.5e-50 201.8 151 65.6
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 2.0e-22 110.5 145 42.1
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 2.9e-21 106.7 231 33.8
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.1e-20 104.8 167 37.7
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 1.4e-20 104.4 240 33.8
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 4.1e-20 102.8 154 39.0
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 9.2e-20 101.7 230 34.3
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 4.6e-19 99.4 227 33.9
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 6.0e-19 99.0 232 34.5
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.0e-18 98.2 250 32.8
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 2.3e-18 97.1 158 35.4
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 2.3e-18 97.1 159 38.4
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 3.0e-18 96.7 250 32.8
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 6.6e-18 95.5 254 32.3
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 1.1e-17 94.7 224 32.6
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 5.6e-17 92.4 226 30.1
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 5.6e-17 92.4 143 38.5
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 9.5e-17 91.7 280 27.5
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 9.5e-17 91.7 228 29.4
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 9.5e-17 91.7 156 36.5
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.2e-16 91.3 214 30.8
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.6e-16 90.9 240 31.7
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 2.1e-16 90.5 229 32.3
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 2.8e-16 90.1 143 38.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 4.7e-16 89.4 154 36.4
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 1.4e-15 87.8 155 34.2
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 1.8e-15 87.4 243 30.0
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 1.8e-15 87.4 242 29.8
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 1.8e-15 87.4 252 30.6
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 4.0e-15 86.3 154 35.1
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 1.2e-14 84.7 172 34.3
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.2e-14 84.7 255 29.8
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 3.4e-14 83.2 217 29.0
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 3.4e-14 83.2 227 30.4
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 4.4e-14 82.8 272 29.4
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 4.4e-14 82.8 233 30.9
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 7.6e-14 82.0 231 29.4
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 9.9e-14 81.6 237 31.2
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 1.7e-13 80.9 233 28.8
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 1.7e-13 80.9 154 37.7
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 2.9e-13 80.1 235 26.4
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 3.7e-13 79.7 233 31.8
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 8.4e-13 78.6 251 31.1
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 8.4e-13 78.6 288 28.5
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 1.1e-12 78.2 218 27.5
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 1.1e-12 78.2 217 35.0
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.4e-12 77.8 197 29.9
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.4e-12 77.8 214 35.0
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.9e-12 77.4 228 29.4
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 1.9e-12 77.4 234 29.5
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.4e-12 77.0 237 28.3
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 4.1e-12 76.3 153 31.4
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 4.1e-12 76.3 217 34.6
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 5.4e-12 75.9 268 25.0
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.2e-11 74.7 252 26.2
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 1.3e-10 71.2 230 27.8
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 1.7e-10 70.9 228 31.1
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 1.7e-10 70.9 124 37.1
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 2.3e-10 70.5 143 29.4
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.9e-10 69.7 237 31.6
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 3.9e-10 69.7 172 33.1
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 8.6e-10 68.6 216 28.7
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.5e-09 67.8 130 38.5
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 5.6e-09 65.9 211 30.8
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.2e-08 64.7 259 25.1
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 1.4e-07 61.2 156 31.4
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.8e-07 60.8 237 29.5
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 1.8e-07 60.8 109 38.5
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 4.0e-07 59.7 45 53.3
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 5.2e-07 59.3 236 23.7
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 6.8e-07 58.9 160 30.6
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 8.9e-07 58.5 162 32.7
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 8.9e-07 58.5 137 32.1
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 1.2e-06 58.2 81 39.5
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 1.2e-06 58.2 159 26.4
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 4.4e-06 56.2 179 31.3
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 9.9e-06 55.1 138 28.3


User provided reference genes

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