Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 4.4e-141 504.6 254 100.0
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 9.6e-136 486.9 254 96.1
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 1.1e-128 463.4 254 91.3
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 6.2e-127 457.6 254 90.9
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 3.1e-126 455.3 254 89.8
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 9.0e-126 453.8 254 90.2
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.0e-116 423.7 254 84.6
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 5.5e-115 417.9 256 83.6
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 4.6e-114 414.8 256 82.8
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.5e-112 409.8 279 77.1
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 2.5e-112 409.1 255 82.7
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 1.2e-109 400.2 281 75.4
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 8.2e-103 377.5 254 75.2
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 7.9e-98 360.9 302 66.6
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.2e-90 337.0 251 69.7
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 7.9e-90 334.3 256 67.6
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 7.9e-90 334.3 254 68.1
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 2.0e-88 329.7 257 68.5
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.3e-88 328.9 254 67.3
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 5.7e-88 328.2 254 67.3
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.3e-87 327.0 258 64.3
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 3.7e-87 325.5 263 64.6
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 2.4e-86 322.8 256 67.2
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.2e-85 320.5 259 65.6
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 6.5e-84 314.7 254 64.2
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.9e-83 313.2 254 63.8
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.9e-83 313.2 261 65.5
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.6e-82 310.1 257 63.8
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 8.0e-82 307.8 254 63.0
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 4.0e-81 305.4 254 63.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 5.2e-81 305.1 259 62.5
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.1e-80 303.9 255 62.7
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.5e-80 303.5 254 63.8
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.5e-80 303.5 258 61.6
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 3.3e-80 302.4 254 62.6
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 4.4e-80 302.0 261 62.1
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.3e-79 300.4 265 61.1
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.2e-79 299.7 259 61.8
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.2e-79 299.7 256 62.1
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 3.7e-79 298.9 258 62.0
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.4e-78 296.2 253 62.5
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 3.1e-78 295.8 277 58.1
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 4.1e-78 295.4 256 60.9
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 5.3e-78 295.0 259 61.8
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.7e-77 292.7 252 60.7
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 2.7e-77 292.7 260 61.2
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 3.5e-77 292.4 260 60.4
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 7.7e-77 291.2 257 60.3
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.0e-76 290.8 256 61.7
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 1.3e-76 290.4 253 59.3
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.7e-76 290.0 262 59.2
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.7e-76 290.0 256 60.9
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.8e-76 288.9 258 61.2
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 5.0e-76 288.5 258 60.1
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 5.0e-76 288.5 254 60.2
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 5.0e-76 288.5 254 61.8
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.1e-75 287.3 256 59.0
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 1.5e-75 287.0 256 60.5
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.9e-75 286.6 255 61.6
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 3.2e-75 285.8 258 59.7
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 5.5e-75 285.0 258 58.1
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 7.2e-75 284.6 260 60.8
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 7.2e-75 284.6 255 57.6
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.2e-74 283.9 254 59.4
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 4.7e-74 282.0 255 59.2
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 4.7e-74 282.0 252 57.1
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.0e-73 280.8 270 55.2
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.0e-73 280.8 245 62.0
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 2.3e-73 279.6 255 60.0
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 2.3e-73 279.6 258 58.9
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 1.5e-72 276.9 270 54.4
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.6e-72 276.2 263 58.6
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.6e-72 276.2 263 58.6
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 3.4e-72 275.8 256 58.6
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 6.3e-71 271.6 252 56.0
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 8.3e-71 271.2 258 55.4
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 1.1e-70 270.8 259 56.8
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 3.1e-70 269.2 255 55.3
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 3.1e-70 269.2 262 54.6
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.1e-70 268.9 204 65.2
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 5.4e-70 268.5 266 54.1
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 9.1e-70 267.7 264 57.6
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.2e-69 267.3 262 59.5
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 1.2e-69 267.3 284 53.9
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 1.9e-67 260.0 268 54.9
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.2e-66 257.3 258 58.5
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 6.8e-65 251.5 257 55.6
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 1.2e-64 250.8 254 54.7
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.7e-63 246.9 253 52.6
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 4.1e-62 242.3 216 61.1
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.0e-60 237.7 262 51.5
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 6.8e-57 224.9 257 50.6
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 2.9e-55 219.5 259 50.2
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.9e-55 218.8 195 63.1
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 4.1e-54 215.7 257 51.4
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 8.6e-52 208.0 157 68.2
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.0e-48 196.8 250 47.6
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.9e-43 180.3 157 56.1
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.4e-38 164.1 243 42.8
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.0e-36 157.9 173 49.7
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.3e-28 130.2 144 57.6
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 1.1e-27 127.9 248 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 2.1e-26 123.6 239 37.2
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.8e-18 96.7 109 55.0
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 1.1e-17 94.7 132 47.7
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.4e-17 93.6 94 50.0
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 6.0e-13 79.0 60 58.3
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 1.8e-12 77.4 44 81.8
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.1e-10 70.5 216 28.2
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 1.8e-09 67.4 216 28.2
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.7e-07 60.8 110 43.6


User provided reference genes

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