Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14750 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 1.8e-119 432.6 218 100.0
Carub.0001s0426 Capsella rubella HOM05D000300 ORTHO05D015941 3.6e-59 232.3 228 60.5
AT1G05005 Arabidopsis thaliana HOM05D000300 ORTHO05D015941 1.1e-55 220.7 209 64.6
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 1.0e-32 144.4 271 40.2
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 9.7e-28 127.9 231 36.8
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 1.3e-27 127.5 222 40.1
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 4.8e-27 125.6 188 43.6
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 8.2e-27 124.8 158 48.1
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 8.2e-27 124.8 215 38.1
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 8.2e-27 124.8 215 38.1
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 8.2e-27 124.8 215 37.2
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 2.4e-26 123.2 149 49.7
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 1.5e-25 120.6 265 38.5
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 5.5e-23 112.1 251 36.3
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 7.2e-23 111.7 99 57.6
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 1.2e-22 110.9 214 41.1
BolC5t31390H Brassica oleracea HOM05D000300 ORTHO05D017381 1.6e-22 110.5 140 49.3
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 4.7e-22 109.0 251 33.5
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 4.7e-22 109.0 251 33.5
AL1G54220 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 6.1e-22 108.6 150 45.3
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 6.1e-22 108.6 168 40.5
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.4e-21 107.5 129 50.4
AT1G43010 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 3.9e-21 105.9 226 37.6
BcaB04g18632 Brassica carinata HOM05D000300 ORTHO05D016697 3.9e-21 105.9 154 41.6
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 5.2e-21 105.5 251 32.7
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 6.7e-21 105.1 138 47.8
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 6.7e-21 105.1 251 32.7
AL1G54230 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 2.6e-20 103.2 97 54.6
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 3.1e-18 96.3 150 41.3
CARHR004430 Cardamine hirsuta HOM05D000300 ORTHO05D015941 4.1e-18 95.9 84 63.1
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 1.6e-17 94.0 96 54.2
Thhalv10001237m.g Eutrema salsugineum HOM05D000300 ORTHO05D015941 3.5e-17 92.8 145 40.7
BolC3t16745H Brassica oleracea HOM05D000300 ORTHO05D000383 4.5e-17 92.4 139 40.3
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 5.9e-17 92.0 96 53.1
BcaB04g18627 Brassica carinata HOM05D000300 ORTHO05D013472 3.8e-16 89.4 141 39.0
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 3.8e-16 89.4 78 60.3
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 3.8e-16 89.4 78 60.3
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 5.0e-16 89.0 148 41.9
BcaB04g18634 Brassica carinata HOM05D000300 ORTHO05D015941 6.5e-16 88.6 104 50.0
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 8.5e-16 88.2 78 59.0
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 8.5e-16 88.2 78 59.0
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 1.1e-15 87.8 110 47.3
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 7.2e-15 85.1 185 34.6
CARHR035800 Cardamine hirsuta HOM05D000300 ORTHO05D015941 1.6e-14 84.0 149 41.6
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 3.6e-14 82.8 78 57.7
Carub.0001s3674 Capsella rubella HOM05D000300 ORTHO05D012934 3.6e-14 82.8 144 41.0
BcaB04g18631 Brassica carinata HOM05D000300 ORTHO05D015941 6.1e-14 82.0 78 57.7
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 1.8e-13 80.5 151 35.1
BcaB04g18628 Brassica carinata HOM05D000300 ORTHO05D021402 1.8e-13 80.5 116 44.0
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 1.8e-13 80.5 127 39.4
A09p38180 Brassica napus HOM05D000300 ORTHO05D013482 2.3e-13 80.1 156 36.5
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 2.3e-13 80.1 215 31.6
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 3.0e-13 79.7 96 50.0
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 8.8e-13 78.2 80 52.5
BraA09t39331Z Brassica rapa HOM05D000300 ORTHO05D013482 2.0e-12 77.0 156 36.5
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 2.6e-12 76.6 158 33.5
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 4.4e-12 75.9 154 33.8
BcaC05g26612 Brassica carinata HOM05D000300 ORTHO05D013482 7.5e-12 75.1 158 33.5
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 7.5e-12 75.1 158 33.5
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 1.7e-11 73.9 158 33.5
Thhalv10027559m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 3.7e-11 72.8 156 32.7
BcaC05g26805 Brassica carinata HOM05D000300 ORTHO05D013482 1.8e-10 70.5 190 31.6
Ca_25911_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 2.4e-10 70.1 141 31.2
Aa31LG8G17610 Aethionema arabicum HOM05D000300 ORTHO05D000383 4.1e-10 69.3 144 36.8
Lj3g0005372 Lotus japonicus HOM05D000300 ORTHO05D000383 7.0e-10 68.6 135 34.8
TPR.G21759 Trifolium pratense HOM05D000300 ORTHO05D000383 9.1e-10 68.2 119 35.3
TAR627G0683 Trochodendron aralioides HOM05D000300 ORTHO05D000383 9.1e-10 68.2 139 33.8
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 1.6e-09 67.4 166 34.3
CSS0038865 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 2.0e-09 67.0 102 39.2
CSS0038961 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 2.0e-09 67.0 102 39.2
CsaV3_7G004380 Cucumis sativus L. HOM05D000300 ORTHO05D000383 2.0e-09 67.0 134 35.8
Actinidia03955 Actinidia chinensis HOM05D000300 ORTHO05D000383 2.7e-09 66.6 140 34.3
Cpa.g.sc34.152 Carica papaya HOM05D000300 ORTHO05D000383 2.7e-09 66.6 136 35.3
Lj3g0027073 Lotus japonicus HOM05D000300 ORTHO05D000383 2.7e-09 66.6 139 33.8
Medtr2g047855 Medicago truncatula HOM05D000300 ORTHO05D000383 2.7e-09 66.6 137 32.1
Lsat_1_v5_gn_4_65120 Lactuca sativa HOM05D000300 ORTHO05D000383 3.5e-09 66.2 143 32.9
Rhsim04G0068200 Rhododendron simsii HOM05D000300 ORTHO05D000383 3.5e-09 66.2 138 34.1
TWI75G1717 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 3.5e-09 66.2 126 34.1
TAR626G0872 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.5e-09 66.2 101 35.6
QL08p038541 Quercus lobata HOM05D000300 ORTHO05D000383 5.9e-09 65.5 99 38.4
Sc07g0007900 Simmondsia chinensis HOM05D000300 ORTHO05D000383 5.9e-09 65.5 125 32.8
vmacro12296 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 5.9e-09 65.5 134 32.8
Medtr8g465890 Medicago truncatula HOM05D000300 ORTHO05D000383 7.7e-09 65.1 124 33.9
THA.LOC104824703 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 7.7e-09 65.1 100 37.0
Dinv26428 Davidia involucrata HOM05D000300 ORTHO05D000383 1.0e-08 64.7 100 35.0
Gohir.D12G142600 Gossypium hirsutum HOM05D000300 ORTHO05D000383 1.0e-08 64.7 122 36.9
Gorai.008G153900 Gossypium raimondii HOM05D000300 ORTHO05D000383 1.0e-08 64.7 122 36.9
MD17G1241400 Malus domestica HOM05D000300 ORTHO05D000383 1.0e-08 64.7 135 34.1
Aqoxy4G00916 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 2.2e-08 63.5 101 38.6
Sed0023860 Sechium edule HOM05D000300 ORTHO05D000383 2.2e-08 63.5 100 36.0
ClCG07G002970 Citrullus lanatus HOM05D000300 ORTHO05D000383 2.9e-08 63.2 155 30.3
Manes.12G084500 Manihot esculenta HOM05D000300 ORTHO05D000383 2.9e-08 63.2 97 36.1
Nitab4.5_0010497g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 2.9e-08 63.2 126 32.5
Rhsim04G0068100 Rhododendron simsii HOM05D000300 ORTHO05D000383 2.9e-08 63.2 148 33.1
Lj3g0008346 Lotus japonicus HOM05D000300 ORTHO05D000383 3.8e-08 62.8 135 31.9
PGSC0003DMG400029687 Solanum tuberosum HOM05D000300 ORTHO05D000383 3.8e-08 62.8 130 33.1
HanXRQChr10g0301221 Helianthus annuus HOM05D000300 ORTHO05D000383 5.0e-08 62.4 94 34.0
Hma1.2p1_0304F.1_g119170 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 5.0e-08 62.4 101 32.7
Lsat_1_v5_gn_3_38180 Lactuca sativa HOM05D000300 ORTHO05D000383 5.0e-08 62.4 101 31.7
Manes.09G041100 Manihot esculenta HOM05D000300 ORTHO05D000383 5.0e-08 62.4 104 39.4
TWI75G0593 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 5.0e-08 62.4 101 37.6
BcaNung01373 Brassica carinata HOM05D000300 ORTHO05D015941 6.5e-08 62.0 45 60.0
Actinidia30477 Actinidia chinensis HOM05D000300 ORTHO05D000383 8.5e-08 61.6 148 30.4
HanXRQChr17g0541881 Helianthus annuus HOM05D000300 ORTHO05D000383 8.5e-08 61.6 110 33.6
COL.COLO4_30181 Corchorus olitorius HOM05D000300 ORTHO05D000383 1.1e-07 61.2 96 39.6
Lalb_Chr01g0005261 Lupinus albus HOM05D000300 ORTHO05D000383 1.1e-07 61.2 131 34.4
AL3G53800 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 1.5e-07 60.8 130 37.7
CAN.G413.26 Capsicum annuum HOM05D000300 ORTHO05D000383 1.5e-07 60.8 133 30.1
Cc05_g07080 Coffea canephora HOM05D000300 ORTHO05D000383 1.5e-07 60.8 133 32.3
MELO3C018741.2 Cucumis melo HOM05D000300 ORTHO05D000383 1.5e-07 60.8 100 35.0
MD02G1294300 Malus domestica HOM05D000300 ORTHO05D000383 1.5e-07 60.8 104 33.7
Potri.013G132700 Populus trichocarpa HOM05D000300 ORTHO05D000383 1.5e-07 60.8 99 37.4
Sc12g0003030 Simmondsia chinensis HOM05D000300 ORTHO05D000383 1.5e-07 60.8 125 34.4
TPR.G6420 Trifolium pratense HOM05D000300 ORTHO05D000383 1.5e-07 60.8 113 32.7
Lalb_Chr14g0366861 Lupinus albus HOM05D000300 ORTHO05D000383 1.9e-07 60.5 129 33.3
MD09G1248800 Malus domestica HOM05D000300 ORTHO05D000383 1.9e-07 60.5 151 32.5
QL08p038536 Quercus lobata HOM05D000300 ORTHO05D000383 1.9e-07 60.5 101 33.7
COL.COLO4_29459 Corchorus olitorius HOM05D000300 ORTHO05D000383 2.5e-07 60.1 136 33.8
Dinv23647 Davidia involucrata HOM05D000300 ORTHO05D000383 2.5e-07 60.1 138 31.9
Os10g0501300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D000383 2.5e-07 60.1 106 34.0
Peaxi162Scf00132g00232 Petunia axillaris HOM05D000300 ORTHO05D000383 2.5e-07 60.1 114 33.3
Phvul.005G104300 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 2.5e-07 60.1 115 29.6
THA.LOC109116053 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 2.5e-07 60.1 122 32.0
CSS0026918 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 3.2e-07 59.7 105 34.3
ClCG03G005990 Citrullus lanatus HOM05D000300 ORTHO05D000383 3.2e-07 59.7 156 31.4
Dinv07554 Davidia involucrata HOM05D000300 ORTHO05D000383 3.2e-07 59.7 133 30.1
FAN14G5747 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.2e-07 59.7 101 31.7
RcHm_v2.0_Chr3g0477891 Rosa chinensis HOM05D000300 ORTHO05D000383 3.2e-07 59.7 101 32.7
Actinidia39312 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.2e-07 59.3 106 35.8
Lj1A724G17 Lonicera japonica HOM05D000300 ORTHO05D000383 4.2e-07 59.3 94 36.2
Nitab4.5_0002158g0100 Nicotiana tabacum HOM05D000300 ORTHO05D000383 4.2e-07 59.3 124 31.5
Nitab4.5_0004411g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 4.2e-07 59.3 136 30.9
Sabra13G0111800 Salix brachista HOM05D000300 ORTHO05D000383 4.2e-07 59.3 137 31.4
TWI77G0117 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 4.2e-07 59.3 154 31.8
Aqoxy4G00922 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 5.5e-07 58.9 101 33.7
RcHm_v2.0_Chr3g0477861 Rosa chinensis HOM05D000300 ORTHO05D000383 5.5e-07 58.9 136 30.1
Hund10803 Selenicereus undatus HOM05D000300 ORTHO05D000383 5.5e-07 58.9 111 34.2
VMungo1080G1438 Vigna mungo HOM05D000300 ORTHO05D000383 5.5e-07 58.9 119 27.7
GSVIVG01033642001 Vitis vinifera HOM05D002649 ORTHO05D002838 7.2e-07 58.5 104 33.7
CiPaw.10G047800 Carya illinoinensis HOM05D000300 ORTHO05D000383 9.4e-07 58.2 91 36.3
Glyma.12G203800 Glycine max HOM05D000300 ORTHO05D000383 9.4e-07 58.2 116 31.0
AT2G20710 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 1.2e-06 57.8 130 36.2
BcaC05g26804 Brassica carinata HOM05D000300 ORTHO05D013482 1.2e-06 57.8 98 37.8
CAN.G1164.24 Capsicum annuum HOM05D000300 ORTHO05D000383 1.2e-06 57.8 132 31.1
AUR62039736 Chenopodium quinoa HOM05D000300 ORTHO05D000383 1.2e-06 57.8 98 35.7
FvH4_6g21294 Fragaria vesca HOM05D000300 ORTHO05D000383 1.2e-06 57.8 101 31.7
Aqoxy4G00887 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.6e-06 57.4 120 34.2
arahy.Tifrunner.gnm1.ann1.6DQP4I Arachis hypogaea HOM05D000300 ORTHO05D000383 1.6e-06 57.4 118 35.6
CSS0000289 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.6e-06 57.4 153 28.8
CSS0011376 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.6e-06 57.4 153 28.8
Carub.0003s3523 Capsella rubella HOM05D000300 ORTHO05D013149 1.6e-06 57.4 126 33.3
CiPaw.03G176200 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.6e-06 57.4 118 36.4
Sp1g13840 Schrenkiella parvula HOM05D002649 ORTHO05D002838 1.6e-06 57.4 122 28.7
Prupe.3G136900 Prunus persica HOM05D000300 ORTHO05D000383 2.1e-06 57.0 129 34.1
CiPaw.10G022400 Carya illinoinensis HOM05D000300 ORTHO05D000383 2.7e-06 56.6 125 27.2
Duzib132G0424 Durio zibethinus HOM05D000300 ORTHO05D000383 2.7e-06 56.6 94 37.2
Sed0017099 Sechium edule HOM05D000300 ORTHO05D000383 2.7e-06 56.6 155 30.3
Aqoxy4G00876 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.6e-06 56.2 104 33.7
AL7G32240 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 3.6e-06 56.2 149 29.5
MSTRG.15889 Avicennia marina HOM05D000300 ORTHO05D000383 3.6e-06 56.2 100 34.0
Cfa020105 Carpinus fangiana HOM05D000300 ORTHO05D000383 3.6e-06 56.2 101 34.7
Haze_20085 Corylus avellana HOM05D000300 ORTHO05D000383 3.6e-06 56.2 103 35.0
CsaV3_7G004370 Cucumis sativus L. HOM05D000300 ORTHO05D000383 3.6e-06 56.2 121 28.9
Gohir.D01G177300 Gossypium hirsutum HOM05D002649 ORTHO05D002838 3.6e-06 56.2 105 31.4
Gorai.002G225900 Gossypium raimondii HOM05D002649 ORTHO05D002838 3.6e-06 56.2 105 31.4
MBI18_g16992_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 3.6e-06 56.2 147 30.6
Potri.013G132500 Populus trichocarpa HOM05D000300 ORTHO05D000383 3.6e-06 56.2 126 31.0
Gohir.D12G004800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 4.7e-06 55.8 95 30.5
Gorai.008G004700 Gossypium raimondii HOM05D000300 ORTHO05D000383 4.7e-06 55.8 95 30.5
Atru.chr1.1431 Acer truncatum HOM05D002649 ORTHO05D002838 6.1e-06 55.5 106 31.1
Aqoxy4G00881 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 6.1e-06 55.5 127 28.3
arahy.Tifrunner.gnm1.ann1.1DRD1N Arachis hypogaea HOM05D000300 ORTHO05D000383 6.1e-06 55.5 104 34.6
ECA246G5073 Erigeron canadensis HOM05D000300 ORTHO05D000383 6.1e-06 55.5 113 29.2
Thhalv10007131m.g Eutrema salsugineum HOM05D002649 ORTHO05D002838 6.1e-06 55.5 122 27.9
Sed0008774 Sechium edule HOM05D002649 ORTHO05D002838 6.1e-06 55.5 100 35.0
Solyc02g078330.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 6.1e-06 55.5 129 31.8
AL1G27600 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 8.0e-06 55.1 121 28.1
BcaB03g16864 Brassica carinata HOM05D000300 ORTHO05D013149 8.0e-06 55.1 130 33.1
Carub.0001s1527 Capsella rubella HOM05D002649 ORTHO05D002838 8.0e-06 55.1 111 28.8
CARHR111390 Cardamine hirsuta HOM05D000300 ORTHO05D013149 8.0e-06 55.1 101 32.7
CiPaw.03G176100 Carya illinoinensis HOM05D000300 ORTHO05D000383 8.0e-06 55.1 101 39.6
Ca_01505_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 8.0e-06 55.1 114 30.7
Nitab4.5_0000512g0120 Nicotiana tabacum HOM05D000300 ORTHO05D000383 8.0e-06 55.1 101 34.7
Prupe.8G026200 Prunus persica HOM05D000300 ORTHO05D000383 8.0e-06 55.1 97 37.1


User provided reference genes

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