Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.5e-96 356.3 194 100.0
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.7e-92 342.8 189 96.8
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.4e-86 322.4 194 85.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 2.0e-85 319.3 195 89.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.0e-81 307.0 194 87.6
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 6.7e-81 304.3 191 87.4
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.1e-80 303.5 192 87.0
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.5e-80 303.1 192 87.0
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.4e-80 301.6 195 85.1
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.5e-72 274.2 189 77.8
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.5e-72 274.2 189 77.8
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.2e-69 266.9 189 76.2
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.1e-59 233.8 127 99.2
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.3e-57 226.1 155 71.0
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 2.3e-57 226.1 155 69.7
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 3.0e-57 225.7 155 69.7
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.0e-57 225.3 155 70.3
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.6e-56 222.6 155 69.7
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 5.7e-56 221.5 190 58.9
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.8e-55 219.2 220 64.1
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 4.9e-55 218.4 154 68.8
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 6.3e-55 218.0 193 63.2
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 8.3e-55 217.6 191 64.9
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 3.1e-54 215.7 155 67.7
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 7.0e-54 214.5 190 57.9
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.6e-53 213.4 190 61.6
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 4.5e-53 211.8 155 67.1
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.0e-52 210.7 155 65.2
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.3e-52 210.3 139 70.5
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 3.8e-52 208.8 191 61.3
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 3.8e-52 208.8 191 56.0
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 6.6e-52 208.0 155 63.9
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 6.6e-52 208.0 181 56.4
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.1e-51 207.2 190 60.5
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.6e-50 203.4 190 55.8
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 3.6e-50 202.2 175 60.6
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 3.6e-50 202.2 190 57.4
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 4.7e-50 201.8 191 62.3
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 8.0e-50 201.1 190 55.8
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.0e-49 200.7 193 56.5
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 2.3e-49 199.5 192 55.7
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.0e-49 199.1 152 65.8
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 4.0e-49 198.7 174 56.3
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.2e-49 198.4 180 55.0
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 5.2e-49 198.4 177 63.3
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 6.8e-49 198.0 174 56.3
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.0e-48 196.4 192 55.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 3.4e-48 195.7 192 56.2
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 4.4e-48 195.3 155 60.6
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 4.4e-48 195.3 192 55.2
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 7.5e-48 194.5 192 55.7
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 9.8e-48 194.1 185 54.1
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.7e-47 193.4 194 53.1
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.9e-47 192.6 193 52.8
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 3.7e-47 192.2 152 62.5
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.9e-47 191.8 152 61.2
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 4.9e-47 191.8 188 53.2
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 4.1e-46 188.7 156 60.9
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.2e-45 187.2 152 61.2
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 1.2e-45 187.2 192 53.1
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.2e-45 187.2 194 57.7
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 5.9e-45 184.9 173 55.5
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.0e-44 184.1 177 53.7
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.3e-44 183.7 158 60.1
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.3e-44 183.0 197 56.9
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 2.3e-44 183.0 195 50.3
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 3.0e-44 182.6 152 59.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 3.9e-44 182.2 192 55.7
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 5.0e-44 181.8 174 54.0
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 6.6e-44 181.4 152 59.2
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 6.6e-44 181.4 176 53.4
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 8.6e-44 181.0 195 49.7
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.5e-43 180.3 175 52.6
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 5.6e-43 178.3 195 48.7
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 5.6e-43 178.3 175 53.1
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 7.3e-43 177.9 192 49.5
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 7.3e-43 177.9 186 49.5
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 9.5e-43 177.6 149 58.4
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.6e-42 176.8 195 48.2
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.6e-42 176.8 195 48.2
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 2.8e-42 176.0 202 47.5
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.6e-42 175.6 197 48.2
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.0e-41 174.1 195 48.7
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.8e-41 173.3 158 55.7
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.8e-41 173.3 191 49.7
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 4.0e-41 172.2 196 50.5
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 5.8e-40 168.3 176 50.0
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 4.9e-39 165.2 187 49.2
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 7.0e-38 161.4 153 58.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 1.2e-37 160.6 194 46.4
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.6e-37 158.7 192 45.3
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.3e-35 152.1 145 52.4
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 1.6e-34 150.2 147 51.0
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 4.7e-34 148.7 123 60.2
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 3.4e-32 142.5 124 59.7
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 4.4e-32 142.1 124 59.7
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 9.8e-32 141.0 122 58.2
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.1e-30 137.5 122 56.6
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.7e-28 130.2 188 43.1
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.3e-27 125.6 110 55.5
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.1e-25 120.9 125 48.0
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-24 117.1 97 60.8
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 4.9e-23 112.1 101 58.4
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-22 110.2 102 56.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.9e-22 110.2 96 51.0
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 5.4e-22 108.6 83 65.1
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 6.0e-21 105.1 72 66.7
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 6.6e-20 101.7 125 38.4
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 8.6e-20 101.3 105 53.3
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 7.3e-19 98.2 123 39.8
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 6.2e-18 95.1 151 44.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-17 93.2 87 56.3
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 6.9e-17 91.7 80 58.8
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.6e-16 89.7 92 48.9
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 9.9e-16 87.8 140 35.7
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 9.9e-16 87.8 140 35.7
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 4.9e-15 85.5 112 45.5
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 2.4e-14 83.2 109 39.4
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.2e-14 82.8 62 67.7
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 3.5e-13 79.3 160 40.0
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 1.3e-12 77.4 68 60.3
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.3e-09 65.5 55 54.5
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-08 63.5 68 44.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 2.6e-08 63.2 63 49.2
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 2.6e-08 63.2 41 68.3
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 5.8e-08 62.0 68 42.6
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 5.8e-08 62.0 97 39.2
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 3.2e-06 56.2 63 42.9


User provided reference genes

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