Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.0e-153 547.0 327 100.0
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 9.8e-125 450.7 333 79.9
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.5e-80 303.1 351 54.4
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.8e-71 273.1 347 53.6
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 5.8e-69 265.4 348 52.3
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.6e-66 257.3 329 52.9
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.2e-59 232.6 328 48.5
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 5.3e-54 215.7 330 48.8
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 9.0e-54 214.9 287 50.2
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.6e-50 204.1 339 46.6
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.4e-49 201.1 357 45.1
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.0e-49 199.9 326 45.1
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.0e-48 197.2 270 47.8
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.3e-48 196.4 323 48.0
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 4.8e-47 192.6 333 42.9
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.1e-46 191.4 322 43.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.5e-45 187.6 325 44.0
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 5.9e-45 185.7 334 42.8
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 2.9e-44 183.3 333 42.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 2.6e-40 170.2 354 39.0
Thhalv10009331m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 8.2e-39 165.2 192 59.9
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.4e-38 163.7 337 41.5
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.9e-36 156.8 149 64.4
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 8.0e-34 148.7 330 39.7
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 8.8e-33 145.2 172 54.7
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.1e-32 144.8 188 50.0
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 6.3e-31 139.0 280 38.2
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.8e-28 129.8 290 34.5
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 5.5e-27 125.9 312 35.3
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.0e-25 121.7 288 35.4
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.4e-25 121.3 286 35.7
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.4e-25 121.3 286 35.7
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 7.5e-24 115.5 259 35.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.3e-23 114.8 253 34.8
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 3.7e-23 113.2 337 30.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 6.3e-23 112.5 333 36.9
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 6.3e-23 112.5 281 34.5
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.1e-22 111.7 291 34.0
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.8e-22 110.9 272 33.1
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 3.1e-22 110.2 296 33.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 5.9e-21 105.9 256 37.1
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 7.7e-21 105.5 287 38.0
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.7e-20 104.4 296 30.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 2.9e-20 103.6 277 31.8
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 5.0e-20 102.8 340 31.5
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 8.5e-20 102.1 244 36.5
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 4.2e-19 99.8 281 33.8
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 9.4e-19 98.6 274 33.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.2e-18 98.2 158 41.8
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.2e-18 98.2 158 43.7
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 3.6e-18 96.7 157 43.3
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.7e-18 96.3 158 43.0
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 8.0e-18 95.5 303 33.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 8.0e-18 95.5 261 33.7
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.0e-17 95.1 333 34.5
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.0e-17 95.1 145 44.1
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.0e-17 95.1 250 35.6
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.0e-17 95.1 277 29.6
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.0e-17 95.1 261 33.7
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.0e-17 95.1 151 45.7
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.8e-17 94.4 251 37.8
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.8e-17 94.4 158 38.6
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 2.3e-17 94.0 237 34.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.0e-17 93.6 182 38.5
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.0e-17 93.2 223 35.0
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 5.2e-17 92.8 225 32.9
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 5.2e-17 92.8 248 36.7
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.2e-16 91.7 248 33.5
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.5e-16 91.3 254 36.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 2.0e-16 90.9 208 35.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.6e-16 90.5 234 33.3
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 2.6e-16 90.5 149 38.3
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.4e-16 90.1 255 34.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 4.4e-16 89.7 282 30.9
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.7e-16 89.4 358 30.4
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 9.8e-16 88.6 281 34.5
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.3e-15 88.2 249 32.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 2.2e-15 87.4 160 38.8
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 2.2e-15 87.4 292 30.5
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.8e-15 87.0 267 37.5
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.7e-15 86.7 327 31.2
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 3.7e-15 86.7 348 29.9
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.9e-15 86.3 226 33.6
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 4.9e-15 86.3 136 41.2
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.1e-14 85.1 149 38.3
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.1e-14 85.1 273 33.7
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.1e-14 85.1 294 30.6
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.1e-14 85.1 282 30.1
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.8e-14 84.3 269 31.6
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-14 84.3 139 38.1
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.8e-14 84.3 127 46.5
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 5.4e-14 82.8 256 32.4
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.4e-14 82.8 273 40.7
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 7.0e-14 82.4 145 37.9
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 9.1e-14 82.0 180 35.6
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-13 81.6 269 30.9
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-13 81.6 131 40.5
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.6e-13 81.3 273 28.9
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-13 81.3 174 36.2
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.7e-13 80.5 343 28.9
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 4.5e-13 79.7 321 30.2
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 5.9e-13 79.3 126 46.0
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 7.7e-13 79.0 285 32.3
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.0e-12 78.6 296 30.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 2.3e-12 77.4 243 30.0
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 5.0e-12 76.3 207 31.9
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 6.6e-12 75.9 129 44.2
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.6e-12 75.9 296 31.1
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 2.5e-11 73.9 57 61.4
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.5e-11 73.9 174 34.5
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 3.3e-11 73.6 211 38.9
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 4.2e-11 73.2 277 29.6
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 7.2e-11 72.4 223 31.4
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 9.5e-11 72.0 199 37.2
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.6e-10 71.2 342 29.8
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.1e-10 69.3 153 39.2
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.1e-10 69.3 153 39.2
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.0e-09 67.0 298 29.5
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 5.2e-09 66.2 109 41.3
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 8.9e-09 65.5 211 31.8
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.2e-08 65.1 75 44.0
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 2.0e-08 64.3 53 60.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 3.4e-08 63.5 161 32.3
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-07 61.6 49 61.2
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.9e-07 59.7 130 34.6
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.4e-06 57.4 144 33.3
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 5.4e-06 56.2 47 57.4


User provided reference genes

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