Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 0.0e+00 1902.5 999 100.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 0.0e+00 1775.0 1000 93.2
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 0.0e+00 1638.2 1000 86.3
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 0.0e+00 1598.9 994 85.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 0.0e+00 1596.6 1000 84.5
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 0.0e+00 1591.6 1017 83.4
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1551.6 999 82.0
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 0.0e+00 1547.3 999 81.8
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 0.0e+00 1540.0 997 81.4
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1513.0 987 80.6
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 0.0e+00 1508.4 1001 80.2
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 0.0e+00 1341.6 1010 71.6
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 0.0e+00 1329.7 896 79.9
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 0.0e+00 1201.8 1001 66.1
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 8.6e-289 997.3 1013 57.6
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 7.3e-256 887.9 998 49.1
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.1e-254 884.0 1004 48.8
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 9.9e-253 877.5 993 48.3
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 2.2e-252 876.3 1009 47.6
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.1e-247 859.8 1048 47.2
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.8e-246 856.7 1004 46.5
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.0e-245 853.2 1002 47.2
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 7.6e-245 851.3 1002 47.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 1.1e-243 847.4 998 47.3
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 5.4e-243 845.1 971 48.5
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 2.1e-242 843.2 966 48.1
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.3e-239 833.9 1002 46.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.6e-239 833.6 1001 47.0
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.1e-239 833.2 998 46.7
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.1e-238 830.9 1010 46.5
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.8e-238 830.1 1057 44.7
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 8.4e-236 821.2 999 45.4
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 1.1e-235 820.8 944 47.8
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 5.5e-235 818.5 894 51.0
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 2.1e-234 816.6 1012 44.9
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.0e-233 814.3 1010 45.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-233 813.9 1008 44.8
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.3e-233 813.9 998 45.1
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 8.7e-233 811.2 1002 46.5
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 2.5e-232 809.7 999 43.2
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 1.6e-231 807.0 1007 45.2
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 2.1e-231 806.6 950 47.3
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 6.2e-231 805.1 1017 44.6
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 9.0e-230 801.2 1006 44.7
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 9.7e-224 781.2 1013 44.6
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 9.7e-224 781.2 1002 43.7
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.3e-223 780.8 999 43.4
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 2.8e-223 779.6 968 44.8
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 6.9e-222 775.0 969 44.1
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 3.8e-220 769.2 1020 42.9
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.5e-219 766.5 992 42.9
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 4.2e-219 765.8 989 43.4
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 7.2e-219 765.0 907 47.4
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 1.6e-218 763.8 1006 42.4
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 2.1e-218 763.5 998 41.2
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.3e-214 748.8 1045 42.3
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.5e-213 747.3 1004 43.0
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.5e-213 747.3 885 47.3
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.3e-212 744.2 999 42.8
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.2e-212 743.4 986 42.8
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 3.2e-211 739.6 982 41.9
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 9.4e-211 738.0 1000 40.8
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.1e-210 736.9 1027 42.7
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 6.1e-210 735.3 1013 41.0
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 5.1e-209 732.3 996 42.8
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.3e-207 727.6 999 41.4
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 5.3e-206 722.2 982 41.5
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 7.7e-205 718.4 1002 41.3
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.9e-204 716.5 1034 41.0
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 6.5e-204 715.3 984 41.8
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 8.0e-202 708.4 1020 41.4
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 8.0e-202 708.4 1032 41.4
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 9.7e-200 701.4 905 43.4
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.3e-199 701.0 966 42.3
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.5e-195 686.8 963 40.2
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.6e-194 684.1 1017 39.6
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 2.7e-194 683.3 900 42.8
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 4.4e-192 676.0 1002 40.7
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 4.4e-192 676.0 1011 40.6
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 8.3e-191 671.8 835 44.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.8e-188 662.9 899 42.6
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 4.2e-187 659.4 881 42.6
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 5.5e-187 659.1 906 41.6
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 5.5e-187 659.1 1017 38.6
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 5.2e-185 652.5 1048 38.9
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.8e-183 646.7 1039 39.1
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 3.7e-183 646.4 933 40.0
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.6e-181 641.0 1002 38.6
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 2.7e-181 640.2 927 40.6
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.6e-173 614.4 773 42.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.4e-168 596.7 996 37.9
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.5e-160 571.2 659 47.3
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 5.8e-160 569.3 707 44.0
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 6.4e-159 565.8 1008 34.5
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 1.0e-156 558.5 807 40.5
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 3.9e-156 556.6 831 38.5
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 5.6e-147 526.2 677 42.4
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.1e-142 511.9 889 37.2
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.0e-140 505.4 1035 33.7
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 6.0e-133 479.6 936 35.7
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.5e-128 464.9 917 33.7
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.6e-67 261.5 1025 25.2
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 7.5e-51 206.8 570 29.1
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 7.8e-48 196.8 136 77.9
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.3e-47 196.1 333 38.4
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 4.0e-44 184.5 179 53.6
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.2e-43 183.0 747 25.8
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.5e-43 182.6 269 39.0
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.5e-38 166.0 120 70.8
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 5.1e-31 141.0 646 23.1
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 4.9e-26 124.4 144 48.6
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 7.8e-24 117.1 89 73.0
A08p36810 Brassica napus HOM05D000256 ORTHO05D000119 3.9e-15 88.2 57 82.5
BraA08t35582Z Brassica rapa HOM05D000256 ORTHO05D000119 3.9e-15 88.2 57 82.5
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.1e-14 86.7 553 21.0
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 2.1e-13 82.4 981 21.4
BcaB02g07770 Brassica carinata HOM05D004445 ORTHO05D005578 3.9e-07 61.6 46 71.7


User provided reference genes

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