Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.4e-52 208.0 101 100.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.2e-50 201.1 101 96.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.9e-47 192.2 101 92.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 7.4e-47 190.3 101 90.1
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.8e-46 188.3 101 88.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 8.1e-46 186.8 101 87.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.1e-46 186.8 101 88.1
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-45 185.3 101 87.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.4e-45 185.3 101 87.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.8e-44 180.6 101 88.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-43 179.5 101 87.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-39 166.0 101 82.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-39 166.0 101 82.2
Aa31LG1G20540 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.7e-17 92.0 95 53.7
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.2e-14 80.5 87 56.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.8e-13 79.3 99 52.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.3e-13 77.8 95 49.5
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.1e-13 77.0 88 54.5
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.2e-12 76.6 97 51.5
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-12 76.3 90 50.0
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.6e-12 75.5 98 52.0
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.5e-12 75.1 98 45.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 4.5e-12 74.7 86 51.2
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.9e-12 74.3 86 52.3
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 7.7e-12 73.9 94 52.1
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 7.7e-12 73.9 99 54.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.7e-12 73.9 90 52.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 87 52.9
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 84 54.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.7e-11 72.8 103 52.4
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.2e-11 72.4 96 46.9
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.2e-11 72.4 106 50.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-11 72.4 105 46.7
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.9e-11 72.0 105 51.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.9e-11 72.0 101 50.5
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 3.8e-11 71.6 94 52.1
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.8e-11 71.6 97 55.7
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.0e-11 71.2 102 52.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 5.0e-11 71.2 83 53.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.5e-11 70.9 93 41.9
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 6.5e-11 70.9 94 51.1
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.5e-11 70.9 104 49.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.5e-11 70.9 91 45.1
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.5e-11 70.5 88 46.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.5e-11 70.5 87 48.3
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 8.5e-11 70.5 95 45.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.1e-10 70.1 95 45.3
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.5e-10 69.7 103 49.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.5e-10 69.7 74 52.7
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-10 69.3 94 50.0
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-10 69.3 94 51.1
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.9e-10 69.3 87 47.1
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-10 69.3 104 46.2
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.5e-10 68.9 86 50.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.5e-10 68.9 109 47.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.5e-10 68.9 95 51.6
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.5e-10 68.9 93 45.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 4.2e-10 68.2 96 45.8
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 4.2e-10 68.2 84 46.4
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 4.2e-10 68.2 103 50.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.2e-10 68.2 82 52.4
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.5e-10 67.8 97 48.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.5e-10 67.8 106 44.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.5e-10 67.8 113 46.9
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.5e-10 67.8 100 44.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.2e-10 67.4 92 47.8
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.2e-10 67.4 103 46.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 9.4e-10 67.0 95 50.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 9.4e-10 67.0 95 50.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.4e-10 67.0 106 46.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 9.4e-10 67.0 83 50.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.2e-09 66.6 97 49.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-09 66.6 99 44.4
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.6e-09 66.2 92 46.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-09 66.2 99 44.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-09 66.2 97 43.3
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.6e-09 66.2 97 48.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-09 66.2 79 53.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.1e-09 65.9 86 52.3
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.1e-09 65.9 106 44.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.1e-09 65.9 91 51.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.1e-09 65.9 94 50.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.7e-09 65.5 80 52.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.7e-09 65.5 97 47.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.7e-09 65.5 106 44.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.6e-09 65.1 95 42.1
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 3.6e-09 65.1 96 44.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.6e-09 65.1 99 43.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 4.7e-09 64.7 94 43.6
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.7e-09 64.7 98 44.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 4.7e-09 64.7 100 45.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 6.1e-09 64.3 86 50.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.1e-09 64.3 103 43.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.0e-09 63.9 88 53.4
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 8.0e-09 63.9 83 53.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.0e-09 63.9 98 44.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 8.0e-09 63.9 98 44.9
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.0e-08 63.5 94 43.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.0e-08 63.5 94 46.8
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 102 45.1
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-08 63.2 122 36.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-08 63.2 122 36.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.4e-08 63.2 104 42.3
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.8e-08 62.8 82 52.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.8e-08 62.8 95 45.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.8e-08 62.8 110 41.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 2.3e-08 62.4 100 39.0
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.3e-08 62.4 98 43.9
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.0e-08 62.0 103 44.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.0e-08 62.0 103 44.7
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.0e-08 62.0 91 46.2
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.0e-08 61.6 95 46.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.0e-08 61.6 97 43.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 4.0e-08 61.6 92 44.6
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.0e-08 61.6 88 47.7
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 5.2e-08 61.2 92 45.7
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 5.2e-08 61.2 83 45.8
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.2e-08 61.2 106 40.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.2e-08 61.2 106 40.6
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 5.2e-08 61.2 93 49.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.7e-08 60.8 85 50.6
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 6.7e-08 60.8 98 45.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.7e-08 60.8 92 47.8
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.7e-08 60.8 102 44.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.7e-08 60.8 102 44.1
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.7e-08 60.8 88 44.3
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 8.8e-08 60.5 97 45.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.8e-08 60.5 108 41.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 8.8e-08 60.5 89 47.2
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-07 60.1 105 43.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-07 60.1 93 44.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-07 60.1 106 39.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.5e-07 59.7 105 43.8
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.5e-07 59.7 94 43.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.5e-07 59.7 85 44.7
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-07 59.7 106 44.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-07 59.7 86 41.9
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-07 59.7 110 40.9
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.5e-07 59.7 81 49.4
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-07 59.3 105 43.8
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-07 59.3 105 43.8
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.0e-07 59.3 105 43.8
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.0e-07 59.3 105 43.8
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.0e-07 59.3 87 48.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.0e-07 59.3 83 49.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.0e-07 59.3 102 42.2
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 2.6e-07 58.9 109 37.6
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.6e-07 58.9 83 49.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.6e-07 58.9 100 40.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.3e-07 58.5 121 38.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 7.5e-07 57.4 97 45.4
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 7.5e-07 57.4 98 43.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.7e-07 57.0 81 48.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-06 56.6 101 41.6
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 1.7e-06 56.2 75 48.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.2e-06 55.8 97 42.3
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.2e-06 55.8 95 45.3
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.8e-06 54.7 100 40.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.8e-06 54.7 103 41.7
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 8.2e-06 53.9 87 42.5


User provided reference genes

Program Settings