Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1420.2 733 100.0
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1323.5 734 91.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1295.0 733 92.1
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1293.5 735 92.5
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1272.7 736 88.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1255.0 738 88.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1246.1 739 87.7
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1246.1 739 87.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1245.3 739 87.6
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1230.3 742 86.3
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1211.1 759 83.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 0.0e+00 1194.1 734 83.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1158.3 751 81.9
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1155.6 754 81.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 0.0e+00 1145.6 737 80.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 0.0e+00 1115.5 614 95.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-300 1035.8 743 77.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 737 72.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.4e-291 1006.1 736 72.3
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.7e-289 998.0 765 69.7
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.9e-285 985.7 686 75.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.2e-285 984.9 720 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.2e-285 984.6 699 73.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 4.7e-284 981.1 713 70.7
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.0e-283 979.9 735 69.8
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.0e-283 978.0 733 68.9
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.0e-283 978.0 727 70.3
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 5.3e-280 967.6 703 70.6
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.4e-275 953.0 700 69.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.2e-274 949.9 738 68.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-272 943.0 709 68.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.4e-272 942.2 703 70.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.1e-272 941.4 709 68.5
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.4e-272 941.0 712 68.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.2e-271 939.9 731 68.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 3.5e-271 938.3 725 68.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-270 936.8 738 67.9
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.3e-270 936.4 709 67.8
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.5e-270 934.1 710 68.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.5e-270 934.1 710 68.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.2e-269 931.4 732 67.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 5.5e-269 931.0 742 66.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 4.0e-267 924.9 706 68.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 8.8e-267 923.7 713 67.5
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.4e-266 921.8 735 65.9
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.5e-266 920.6 729 66.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 8.3e-265 917.1 726 67.2
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.1e-264 915.2 742 65.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 3.1e-264 915.2 736 66.2
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.4e-264 914.4 765 64.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 7.0e-264 914.1 735 65.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.0e-263 912.5 721 65.7
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.7e-262 909.4 658 72.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.6e-262 907.1 734 65.3
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.9e-261 906.0 743 65.5
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 5.6e-261 904.4 725 66.9
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.4e-259 899.8 717 66.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 5.2e-259 897.9 654 72.3
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 8.9e-259 897.1 724 65.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 5.4e-256 887.9 814 60.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.7e-254 882.9 727 63.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.5e-253 879.8 731 65.0
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 3.3e-253 878.6 700 65.1
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 4.3e-253 878.2 731 64.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 9.5e-253 877.1 700 65.0
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 9.5e-253 877.1 704 65.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.2e-252 876.7 726 65.0
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.8e-252 875.5 700 65.1
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 3.6e-252 875.2 717 63.2
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 4.7e-252 874.8 703 65.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.0e-251 873.6 700 65.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.0e-251 873.6 725 63.6
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 2.3e-251 872.5 705 64.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.1e-251 872.1 702 64.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 5.2e-251 871.3 725 63.6
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 6.8e-251 870.9 717 64.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.8e-251 870.9 734 63.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 8.9e-251 870.5 700 65.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.2e-250 870.2 726 63.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-250 870.2 702 64.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.5e-250 869.8 700 65.4
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.4e-250 868.6 711 64.4
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.4e-250 868.2 724 63.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 7.5e-250 867.5 731 63.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.7e-249 866.3 700 64.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.9e-248 862.8 723 64.0
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.9e-248 862.8 723 64.3
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.0e-246 854.7 730 61.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.9e-245 852.8 747 61.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.3e-245 852.0 684 66.7
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 7.3e-245 850.9 712 63.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.0e-242 842.8 734 61.3
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.5e-242 840.9 734 60.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.9e-241 839.0 707 63.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.4e-241 837.8 685 63.9
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.4e-240 835.9 729 60.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.0e-238 830.5 725 62.8
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.3e-238 830.1 703 61.6
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.3e-238 830.1 743 59.6
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.7e-238 829.7 711 62.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 8.6e-238 827.4 711 61.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.2e-234 817.0 707 61.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.4e-234 815.5 728 60.6
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-233 813.1 732 58.6
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.8e-233 812.0 734 58.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.1e-232 808.5 641 66.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 6.6e-230 801.2 731 59.1
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 9.6e-229 797.3 726 59.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.6e-228 796.6 679 62.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.2e-227 791.6 708 59.7
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.2e-226 790.4 729 59.5
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.4e-226 788.9 734 57.5
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 7.6e-226 787.7 722 58.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.3e-222 776.9 709 59.9
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 6.9e-211 738.0 584 68.3
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 7.6e-210 734.6 717 56.3
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.4e-208 730.3 615 64.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 4.3e-205 718.8 713 54.8
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.7e-201 706.8 734 52.6
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 9.3e-200 701.0 650 59.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.9e-199 698.0 707 55.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.9e-191 671.4 552 67.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-184 651.0 573 62.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 7.4e-181 638.3 710 50.4
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.8e-179 633.6 580 60.9
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.9e-178 628.6 566 62.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.3e-173 612.8 664 51.5
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.7e-172 610.5 700 50.1
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.8e-172 609.0 489 65.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 8.6e-153 545.0 710 44.9
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.5e-136 490.3 357 69.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.4e-133 479.6 324 78.7
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.8e-133 478.4 616 47.9
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 7.3e-128 462.2 874 37.1
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.4e-118 431.4 441 56.7
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.3e-102 376.3 261 72.4
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.3e-96 356.7 260 70.0
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 5.5e-91 339.7 290 65.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.0e-81 308.9 372 48.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.4e-73 282.0 363 51.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 9.1e-70 269.2 327 51.1
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 8.5e-68 262.7 507 36.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.5e-53 213.8 551 33.2
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-50 205.3 131 79.4
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.4e-46 192.2 125 78.4
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.4e-46 191.4 123 72.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.4e-46 191.4 187 55.1
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.7e-39 168.7 123 71.5
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.8e-34 151.4 139 59.7
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.9e-28 131.3 177 44.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.9e-27 128.6 178 43.3
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-15 89.0 122 46.7
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.7e-15 89.0 66 72.7
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-14 85.1 52 73.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-13 80.5 53 64.2
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-13 80.5 53 64.2
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.3e-11 74.7 87 44.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.6e-10 72.4 83 53.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.1e-10 72.0 58 65.5
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.3e-09 68.6 85 43.5
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 6.8e-09 67.0 63 55.6
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.2e-07 62.0 37 81.1


User provided reference genes

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