Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.9e-110 402.5 198 100.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.6e-98 362.8 195 92.8
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 9.3e-86 320.5 194 84.0
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 3.8e-63 245.4 207 62.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.4e-54 216.9 184 63.6
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.4e-54 216.9 184 63.6
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 6.1e-53 211.5 185 63.2
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.3e-52 210.3 185 62.7
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.1e-51 207.2 159 66.0
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.1e-51 207.2 159 66.0
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.9e-44 182.2 194 49.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 3.9e-44 182.2 143 66.4
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 6.3e-42 174.9 180 50.0
Carub.0001s0282 Capsella rubella HOM05D004201 ORTHO05D012052 5.9e-40 168.3 115 73.9
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-39 167.2 152 55.9
A10p11030 Brassica napus HOM05D004201 ORTHO05D012052 1.7e-39 166.8 153 60.1
BraA10t43195Z Brassica rapa HOM05D004201 ORTHO05D012052 1.7e-39 166.8 153 60.1
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.0e-39 165.2 153 53.6
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 2.2e-31 139.8 164 51.8
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.5e-30 136.3 134 47.0
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.2e-29 134.0 179 43.6
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.2e-29 134.0 179 43.6
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.6e-29 133.7 210 41.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.7e-29 132.9 203 42.9
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 3.6e-29 132.5 170 42.9
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.6e-29 132.5 166 45.8
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 6.1e-29 131.7 160 45.6
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 8.0e-29 131.3 210 41.0
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.4e-28 130.6 212 40.1
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.0e-28 129.0 209 38.8
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.4e-25 120.6 176 39.2
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 5.3e-25 118.6 197 38.6
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.5e-24 115.9 140 43.6
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.2e-21 107.5 234 32.1
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-21 106.7 234 33.3
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.6e-21 105.9 230 33.9
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.1e-21 105.1 234 33.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.1e-21 105.1 177 37.3
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.0e-20 102.8 168 42.9
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.2e-20 102.1 198 39.9
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 8.8e-20 101.3 206 37.9
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-19 99.0 157 42.7
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.5e-19 98.2 188 34.6
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.7e-18 97.1 169 40.8
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.2e-18 96.7 199 38.2
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-18 95.9 180 39.4
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 8.3e-18 94.7 177 41.2
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 8.3e-18 94.7 177 41.2
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-17 93.6 174 39.1
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-17 93.6 205 36.6
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.8e-17 93.6 183 39.3
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.8e-17 93.6 165 41.2
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-17 93.6 177 41.2
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.1e-17 92.8 204 36.3
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 4.1e-17 92.4 169 39.6
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 5.4e-17 92.0 180 38.9
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 5.4e-17 92.0 169 37.9
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 9.1e-17 91.3 169 39.6
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 9.1e-17 91.3 169 39.6
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 9.1e-17 91.3 169 39.6
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.2e-16 90.9 157 39.5
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-15 87.8 207 36.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-15 87.8 180 37.8
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-15 87.4 210 34.8
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.7e-15 87.0 198 37.4
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 6.5e-15 85.1 166 38.6
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.5e-15 85.1 120 43.3
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 8.5e-15 84.7 192 35.4
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 8.5e-15 84.7 166 38.6
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-14 84.3 210 33.3
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-14 83.6 190 35.8
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.2e-14 81.6 158 38.0
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 7.2e-14 81.6 161 36.0
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 9.4e-14 81.3 152 33.6
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.6e-13 80.5 161 36.6
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.7e-13 79.7 210 33.3
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-13 79.7 192 36.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.7e-13 79.7 175 37.1
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.7e-13 79.7 175 37.1
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.7e-13 79.0 185 35.7
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 8.0e-13 78.2 182 34.1
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 8.0e-13 78.2 187 33.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 8.0e-13 78.2 171 39.2
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-12 77.8 166 34.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-12 77.4 176 36.4
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.8e-12 77.0 209 33.0
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-12 77.0 161 34.8
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.3e-12 76.6 181 37.0
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-12 76.3 205 32.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 3.0e-12 76.3 207 31.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 4.0e-12 75.9 186 33.3
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.2e-12 75.5 151 33.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-12 75.5 193 33.2
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-12 75.1 164 36.0
THA.LOC109116327 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.8e-12 75.1 204 32.4
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 8.8e-12 74.7 205 35.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 2.0e-11 73.6 162 35.8
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.0e-11 73.6 195 36.9
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.4e-11 72.8 188 33.5
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.4e-11 72.8 188 33.5
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 3.4e-11 72.8 164 33.5
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-11 72.4 204 32.4
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 4.4e-11 72.4 211 30.8
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 9.8e-11 71.2 156 35.9
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-10 70.9 150 32.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 166 33.7
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 166 34.3
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 164 32.9
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 164 32.9
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 164 35.4
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.7e-10 70.5 162 37.0
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-10 70.5 212 31.1
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-10 70.5 213 30.0
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 2.2e-10 70.1 69 49.3
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-10 68.9 179 33.5
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 4.9e-10 68.9 152 36.2
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 6.3e-10 68.6 164 34.8
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.3e-10 68.6 211 29.9
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.3e-10 68.2 160 31.9
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-09 67.8 164 34.1
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-09 66.6 214 30.4
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-09 66.2 164 35.4
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-09 65.9 179 31.8
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-09 65.9 164 33.5
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-09 65.5 176 33.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 7.0e-09 65.1 166 33.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 7.0e-09 65.1 166 33.1
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-09 64.7 156 34.6
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 9.2e-09 64.7 75 45.3
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-08 64.3 166 33.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-08 64.3 164 33.5
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 2.0e-08 63.5 152 34.9
CARHR003040 Cardamine hirsuta HOM05D004201 ORTHO05D012052 2.0e-08 63.5 63 52.4
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-08 62.8 165 32.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 4.5e-08 62.4 175 34.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.9e-08 62.0 212 30.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 5.9e-08 62.0 218 29.4
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.7e-08 61.6 187 33.2
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-07 60.1 218 30.7
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-07 60.1 166 33.1
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.9e-07 59.7 167 31.1
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-07 59.7 177 32.8
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.9e-07 59.7 144 33.3
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-07 59.3 161 32.9
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.0e-07 58.9 84 41.7
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.6e-07 58.5 195 30.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.6e-07 58.5 187 33.2
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-06 57.4 210 31.9
AL5G37830 Arabidopsis lyrata HOM05D014826 ORTHO05D012052 1.9e-06 57.0 42 66.7
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-06 57.0 184 31.5
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-06 57.0 155 34.2
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.3e-06 56.2 173 29.5
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.3e-06 55.1 181 29.3
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.3e-06 55.1 140 32.9
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 9.5e-06 54.7 185 29.7


User provided reference genes

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