Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.7e-114 416.0 206 100.0
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.4e-98 360.9 195 92.8
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 2.4e-89 332.4 208 83.2
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 2.1e-64 249.6 214 61.2
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.2e-58 229.6 218 59.2
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.2e-58 229.6 218 59.2
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.2e-57 225.3 218 59.2
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 9.4e-57 224.2 218 58.7
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 3.8e-50 202.2 168 61.9
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 3.8e-50 202.2 168 61.9
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.0e-42 177.6 152 61.8
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-42 177.2 189 50.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 4.2e-41 172.2 180 50.0
A10p11030 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-40 169.9 154 59.1
BraA10t43195Z Brassica rapa HOM05D004201 ORTHO05D012052 2.1e-40 169.9 154 59.1
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.7e-37 160.2 213 45.5
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-37 159.8 197 47.7
Carub.0001s0282 Capsella rubella HOM05D004201 ORTHO05D012052 1.4e-36 157.1 121 67.8
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.2e-30 137.5 211 46.0
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.2e-29 133.3 134 45.5
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.1e-28 129.4 220 39.1
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 5.4e-28 128.6 187 41.7
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 5.4e-28 128.6 187 41.7
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.4e-28 128.6 191 42.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.0e-28 128.3 217 39.6
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 9.2e-28 127.9 159 45.3
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 9.2e-28 127.9 170 42.4
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.2e-27 127.5 234 39.3
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.6e-27 127.1 177 42.4
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.7e-27 126.3 191 41.9
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 4.3e-25 119.0 193 37.8
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.4e-23 114.0 197 37.6
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 8.9e-23 111.3 172 40.1
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.2e-21 106.7 244 31.6
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.4e-21 105.1 244 32.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.1e-20 104.4 231 32.9
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.8e-20 103.6 214 37.9
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.2e-20 101.3 231 32.9
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-19 100.1 157 42.7
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.0e-19 100.1 220 32.7
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.7e-19 99.8 219 37.0
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.5e-19 99.4 171 41.5
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-18 97.8 180 38.9
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-18 97.4 223 36.3
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-18 97.1 180 38.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-18 97.1 180 38.3
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 3.0e-18 96.3 208 38.0
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 3.9e-18 95.9 180 38.3
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 5.0e-18 95.5 169 40.2
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.0e-18 95.5 188 34.6
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 6.6e-18 95.1 224 37.5
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-17 94.4 210 36.7
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-17 94.0 180 38.3
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 4.3e-17 92.4 181 39.2
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 5.6e-17 92.0 169 38.5
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 7.3e-17 91.7 215 35.8
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-16 90.9 180 38.3
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 1.6e-16 90.5 169 38.5
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 1.6e-16 90.5 169 38.5
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 1.6e-16 90.5 169 38.5
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 2.1e-16 90.1 156 38.5
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.8e-16 89.7 165 39.4
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-16 89.7 226 37.2
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 1.1e-15 87.8 168 36.9
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.3e-15 86.7 256 34.0
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.3e-15 86.7 210 34.3
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.2e-15 85.5 222 34.7
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 5.2e-15 85.5 167 38.3
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 1.2e-14 84.3 166 38.0
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.0e-14 83.6 223 35.0
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 9.8e-14 81.3 163 37.4
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 9.8e-14 81.3 182 37.4
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-13 80.9 206 34.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-13 80.5 202 34.7
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 1.7e-13 80.5 164 36.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-13 80.1 191 36.6
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.7e-13 79.3 120 42.5
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.9e-13 79.0 217 34.6
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.9e-13 79.0 217 34.6
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.4e-13 78.6 158 36.7
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 6.4e-13 78.6 216 33.3
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 8.3e-13 78.2 163 36.2
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-12 77.8 152 32.9
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.4e-12 77.4 184 37.0
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.9e-12 77.0 218 33.0
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-12 76.6 166 36.1
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-12 76.6 175 37.1
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.4e-12 76.6 175 37.1
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 3.2e-12 76.3 217 32.3
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 3.2e-12 76.3 206 37.9
THA.LOC109116327 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.1e-12 75.9 189 33.3
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 5.4e-12 75.5 193 33.2
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 5.4e-12 75.5 195 35.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 5.4e-12 75.5 188 34.0
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 7.0e-12 75.1 157 36.3
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 9.2e-12 74.7 214 33.2
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-11 74.3 197 36.0
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-11 74.3 156 37.8
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-11 73.9 156 37.2
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-11 73.9 212 32.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-11 73.6 158 34.8
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-11 73.6 156 37.2
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.0e-11 73.6 236 32.6
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-11 73.2 157 35.7
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-11 73.2 157 35.7
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-11 72.8 170 35.3
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-11 72.8 178 36.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 4.6e-11 72.4 156 37.8
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 6.0e-11 72.0 158 36.1
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 6.0e-11 72.0 156 35.9
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 7.8e-11 71.6 157 36.3
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-10 71.2 156 36.5
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-10 70.9 175 35.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-10 70.9 178 34.3
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-10 70.1 210 31.9
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.3e-10 70.1 207 30.0
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-10 69.7 156 35.9
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-10 69.7 158 36.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-10 69.7 156 36.5
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-10 69.7 162 35.8
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 3.0e-10 69.7 69 49.3
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.0e-10 68.9 189 30.2
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.0e-10 68.9 150 32.0
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.6e-10 68.6 160 31.2
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 6.6e-10 68.6 177 34.5
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.6e-10 68.2 204 35.3
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.6e-10 68.2 205 29.8
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-09 66.2 158 35.4
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-09 65.9 195 33.3
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-09 65.9 195 33.3
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 5.6e-09 65.5 136 36.8
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 7.3e-09 65.1 223 30.5
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 9.5e-09 64.7 75 45.3
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-08 64.3 204 32.8
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-08 63.5 220 33.6
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-08 63.5 177 33.3
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-08 62.8 179 31.8
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 4.7e-08 62.4 155 36.1
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-07 61.2 158 34.8
CARHR003040 Cardamine hirsuta HOM05D004201 ORTHO05D012052 1.1e-07 61.2 63 50.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-07 60.8 186 32.3
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-07 60.8 195 33.3
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-07 60.8 158 33.5
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.3e-07 60.1 178 32.0
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.2e-07 58.9 207 30.4
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-07 58.5 189 30.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 8.9e-07 58.2 178 32.0
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-06 57.8 208 31.2
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.5e-06 57.4 84 40.5
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-06 57.0 203 29.6
AL5G37830 Arabidopsis lyrata HOM05D014826 ORTHO05D012052 2.0e-06 57.0 42 66.7
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-06 56.2 161 32.3
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.8e-06 55.5 184 29.3
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 7.5e-06 55.1 189 30.7


User provided reference genes

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