Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-130 469.9 253 100.0
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-100 369.4 240 82.1
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.1e-82 308.1 239 66.5
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.1e-66 256.5 175 69.1
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.8e-40 167.9 153 53.6
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 8.3e-39 164.9 155 52.9
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 8.3e-39 164.9 155 52.9
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-38 163.7 213 45.5
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.8e-38 163.7 211 45.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.1e-38 162.5 221 44.3
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 9.2e-38 161.4 221 43.9
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.5e-37 159.5 153 50.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 3.9e-36 156.0 220 43.6
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 3.9e-36 156.0 220 43.6
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 2.0e-32 143.7 142 51.4
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.7e-28 130.6 156 42.9
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 6.6e-28 128.6 165 42.4
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.6e-26 124.0 169 39.1
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 6.2e-26 122.1 157 40.8
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.2e-25 119.0 205 36.6
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 8.9e-25 118.2 232 36.2
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.2e-24 117.9 229 36.7
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.5e-24 117.5 205 37.6
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 3.4e-24 116.3 155 42.6
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 3.4e-24 116.3 155 42.6
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 3.4e-24 116.3 155 42.6
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.4e-24 115.9 155 42.6
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 7.5e-24 115.2 162 40.1
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.9e-22 110.5 155 43.9
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.7e-21 106.7 193 34.2
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.3e-19 99.8 162 38.3
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.1e-18 95.1 152 35.5
A10p11030 Brassica napus HOM05D004201 ORTHO05D012052 1.4e-17 94.4 103 44.7
BraA10t43195Z Brassica rapa HOM05D004201 ORTHO05D012052 1.4e-17 94.4 103 44.7
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 8.9e-17 91.7 152 36.8
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-16 90.5 215 36.3
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 3.4e-16 89.7 163 36.2
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 1.3e-15 87.8 163 36.2
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 1.3e-15 87.8 163 36.2
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 1.3e-15 87.8 163 36.2
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.2e-15 87.0 168 36.9
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 2.2e-15 87.0 164 36.0
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.2e-15 87.0 154 33.8
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.9e-15 86.7 161 37.3
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.9e-15 86.7 154 33.8
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 6.4e-15 85.5 161 33.5
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.9e-14 84.0 159 35.2
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-14 83.2 154 35.1
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-14 82.8 163 33.7
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-14 82.4 156 32.1
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 9.2e-14 81.6 166 37.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-13 81.3 251 29.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.2e-13 81.3 227 33.0
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 1.2e-13 81.3 161 35.4
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-13 80.9 158 34.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.1e-13 80.5 160 32.5
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-13 80.5 224 30.8
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.1e-13 80.5 158 34.8
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.7e-13 80.1 232 35.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.7e-13 80.1 221 36.7
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-13 79.7 159 34.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 4.6e-13 79.3 221 32.1
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 4.6e-13 79.3 153 35.3
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.0e-13 79.0 90 43.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-12 78.2 158 32.3
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.0e-12 78.2 157 31.2
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.7e-12 77.4 155 34.2
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-12 77.4 157 30.6
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-12 77.0 153 33.3
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-12 77.0 153 34.0
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.3e-12 77.0 223 30.5
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.3e-12 77.0 157 30.6
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 3.0e-12 76.6 173 32.4
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-12 76.6 141 36.9
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 5.1e-12 75.9 154 37.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.6e-12 75.5 267 31.5
AL5G37830 Arabidopsis lyrata HOM05D014826 ORTHO05D012052 6.6e-12 75.5 49 81.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 6.6e-12 75.5 156 34.0
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 6.6e-12 75.5 156 33.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-12 75.1 163 33.1
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 8.7e-12 75.1 109 39.4
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-11 74.3 156 33.3
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-11 74.3 156 34.0
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 1.5e-11 74.3 153 34.6
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-11 72.8 221 28.1
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 4.3e-11 72.8 153 33.3
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 4.3e-11 72.8 174 30.5
Carub.0001s0282 Capsella rubella HOM05D004201 ORTHO05D012052 5.6e-11 72.4 83 42.2
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-11 72.0 164 33.5
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 7.3e-11 72.0 164 33.5
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 7.3e-11 72.0 172 34.3
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 9.6e-11 71.6 156 32.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 9.6e-11 71.6 156 32.7
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.2e-10 71.2 148 31.1
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.6e-10 70.9 163 33.7
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-10 70.9 164 32.9
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-10 70.9 164 33.5
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-10 70.5 135 34.8
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-10 70.1 153 32.0
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-10 70.1 156 32.7
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-10 70.1 156 32.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-10 70.1 163 31.9
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-10 70.1 153 33.3
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.6e-10 69.7 138 31.2
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 3.6e-10 69.7 160 33.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 4.7e-10 69.3 153 32.7
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-10 69.3 86 41.9
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-10 68.6 156 29.5
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-10 68.6 153 32.7
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-10 68.6 223 28.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-10 68.6 153 32.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 8.1e-10 68.6 153 32.7
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 8.1e-10 68.6 153 30.1
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.1e-10 68.6 133 34.6
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-09 68.2 230 29.6
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-09 67.8 170 30.0
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.4e-09 67.8 170 30.0
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.4e-09 67.0 85 42.4
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-09 66.6 82 41.5
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-09 66.6 158 32.3
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 3.1e-09 66.6 244 26.2
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.2e-09 65.9 243 31.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.2e-09 65.9 233 29.6
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 6.9e-09 65.5 153 31.4
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 6.9e-09 65.5 239 28.5
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.2e-08 64.7 159 30.8
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 1.2e-08 64.7 66 48.5
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.5e-08 64.3 159 31.4
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-08 64.3 177 30.5
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.6e-08 63.5 107 32.7
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.4e-08 63.2 73 46.6
THA.LOC109116327 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.4e-08 62.8 165 31.5
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 7.6e-08 62.0 153 32.0
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 7.6e-08 62.0 175 31.4
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-07 61.2 165 33.3
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-07 60.5 227 26.4
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-07 60.5 152 30.9
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.2e-07 60.5 85 38.8
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.9e-07 59.3 158 27.8
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 6.4e-07 58.9 148 27.0
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.4e-07 58.5 152 31.6
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.4e-07 58.5 154 27.9
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-06 58.2 160 30.0
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-06 58.2 155 30.3
CARHR003040 Cardamine hirsuta HOM05D004201 ORTHO05D012052 1.4e-06 57.8 65 46.2
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-06 57.0 158 30.4


User provided reference genes

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