Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.8e-237 825.5 401 100.0
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 5.4e-226 787.3 401 96.3
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 3.9e-216 754.6 401 91.8
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 7.1e-210 733.8 401 89.0
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 5.5e-202 707.6 387 88.9
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 6.2e-198 694.1 411 84.2
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 2.5e-191 672.2 408 81.4
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 2.1e-190 669.1 406 80.5
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 2.6e-188 662.1 402 80.8
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-187 659.8 409 79.0
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 1.7e-187 659.4 410 79.3
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 1.6e-185 652.9 410 79.3
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 6.7e-184 647.5 414 78.5
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 8.7e-184 647.1 410 78.8
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 1.4e-181 639.8 413 76.8
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 5.3e-165 584.7 409 71.1
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 6.3e-158 561.2 398 69.1
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-139 500.4 371 70.1
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 4.3e-122 442.2 406 56.4
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 4.3e-122 442.2 415 55.2
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 3.6e-121 439.1 413 55.0
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 2.3e-120 436.4 410 56.3
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 3.1e-120 436.0 422 53.3
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 2.6e-119 433.0 415 55.7
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 2.6e-119 433.0 399 55.4
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 4.9e-118 428.7 409 54.5
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.9e-117 426.8 412 54.9
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 1.9e-117 426.8 406 53.7
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 7.1e-117 424.9 417 54.0
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.2e-116 424.1 425 53.4
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.0e-115 421.0 410 54.6
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.7e-115 420.2 408 53.9
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 3.0e-115 419.5 416 53.4
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 1.1e-114 417.5 417 53.0
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 2.5e-114 416.4 404 55.0
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.5e-114 416.4 411 54.7
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 3.3e-114 416.0 416 53.6
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 3.3e-114 416.0 413 52.5
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 4.3e-114 415.6 416 53.1
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 7.3e-114 414.8 410 54.4
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 2.1e-113 413.3 407 55.8
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 3.6e-113 412.5 407 52.8
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.4e-112 410.6 407 53.3
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.8e-112 410.2 412 53.2
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 3.1e-112 409.5 412 54.1
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 5.2e-112 408.7 419 51.6
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 8.9e-112 407.9 418 52.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 8.9e-112 407.9 390 55.1
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 2.0e-111 406.8 407 53.8
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.6e-111 406.4 412 54.4
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 3.4e-111 406.0 404 52.7
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 4.4e-111 405.6 413 53.5
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 4.4e-111 405.6 412 53.6
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 1.7e-110 403.7 410 53.9
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 2.2e-110 403.3 415 52.5
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 6.4e-110 401.7 409 51.8
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 8.4e-110 401.4 409 52.3
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.2e-108 397.5 402 53.5
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 1.2e-108 397.5 417 51.1
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 2.7e-108 396.4 410 50.7
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 1.0e-107 394.4 411 51.3
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 3.9e-107 392.5 344 61.0
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 6.6e-107 391.7 405 52.3
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.1e-106 391.0 416 51.7
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 3.3e-106 389.4 526 44.3
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 5.6e-106 388.7 401 52.1
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 7.3e-106 388.3 400 53.0
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 1.8e-104 383.6 401 52.1
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 7.6e-103 378.3 413 51.1
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 1.3e-102 377.5 416 48.3
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 1.3e-102 377.5 430 48.6
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 2.2e-102 376.7 394 52.3
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.4e-101 374.0 406 51.0
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 1.9e-101 373.6 399 50.9
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 4.2e-101 372.5 401 49.9
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 7.1e-101 371.7 392 51.5
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 9.3e-101 371.3 417 48.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 4.6e-100 369.0 402 49.8
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 1.7e-99 367.1 398 49.2
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 4.3e-98 362.5 386 50.5
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 9.6e-98 361.3 343 54.5
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.2e-95 354.4 400 49.2
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 2.9e-94 349.7 354 53.4
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 1.4e-93 347.4 434 46.8
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 3.2e-93 346.3 395 48.1
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 4.6e-92 342.4 358 51.7
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.1e-90 337.8 352 50.3
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 7.4e-90 335.1 412 47.3
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.3e-86 324.3 404 47.8
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 4.9e-86 322.4 395 47.3
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 1.4e-85 320.9 341 49.9
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 7.1e-85 318.5 334 52.7
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 1.3e-83 314.3 410 44.4
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 3.3e-82 309.7 374 48.1
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.1e-81 307.0 492 40.4
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 2.1e-76 290.4 362 48.1
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 3.7e-73 279.6 311 50.5
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.8e-72 277.3 317 47.6
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 5.9e-71 272.3 432 41.7
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 6.5e-70 268.9 317 47.0
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 9.3e-69 265.0 298 48.3
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.7e-67 258.8 286 49.0
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 1.4e-64 251.1 356 43.3
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 1.8e-64 250.8 320 42.8
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 6.1e-60 235.7 314 45.9
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 1.0e-54 218.4 163 63.2
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 8.5e-54 215.3 397 35.0
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 7.2e-53 212.2 377 35.5
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 9.4e-53 211.8 409 35.5
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 2.1e-52 210.7 252 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 1.4e-51 208.0 462 33.8
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 2.3e-51 207.2 192 62.5
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 5.7e-50 202.6 316 42.1
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.1e-48 198.4 258 45.0
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 3.8e-46 189.9 250 45.2
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 5.5e-45 186.0 261 43.3
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 9.1e-32 142.1 76 81.6
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 3.5e-31 140.2 76 78.9
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 7.7e-31 139.0 341 29.3
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 1.0e-30 138.7 72 84.7
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.7e-30 137.9 182 44.0
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.9e-30 137.1 76 78.9
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 3.8e-30 136.7 70 85.7
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 3.2e-29 133.7 224 38.4
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 5.2e-27 126.3 72 77.8
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.3e-22 111.7 593 23.1
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.9e-21 107.8 202 36.6
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 1.2e-20 105.1 119 49.6
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.1e-20 104.4 56 78.6
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 1.0e-19 102.1 168 37.5
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 2.6e-18 97.4 433 24.2
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 1.7e-17 94.7 165 37.0
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 6.2e-12 76.3 73 47.9
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 4.1e-08 63.5 58 50.0
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.0e-07 59.7 170 32.9
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 6.6e-06 56.2 115 32.2


User provided reference genes

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