Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.1e-30 134.0 66 100.0
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.7e-28 128.6 66 97.0
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 4.2e-27 124.0 66 90.9
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 3.0e-25 117.9 65 87.7
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 8.8e-25 116.3 65 84.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 8.8e-25 116.3 65 84.6
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 2.0e-24 115.2 65 83.1
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.4e-24 114.4 65 83.1
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 3.4e-24 114.4 65 83.1
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 4.4e-24 114.0 65 81.5
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 4.4e-24 114.0 65 81.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 5.7e-24 113.6 65 81.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 7.5e-24 113.2 65 83.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.3e-23 112.5 65 81.5
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-23 110.5 67 79.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 7.0e-22 106.7 65 78.5
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 4.5e-21 104.0 65 75.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.8e-20 100.9 65 72.3
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 5.0e-20 100.5 65 70.8
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 6.6e-20 100.1 64 70.3
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 6.6e-20 100.1 64 70.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 8.6e-20 99.8 65 70.8
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.1e-19 99.4 65 70.8
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.9e-19 98.6 64 70.3
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.9e-19 98.6 64 70.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.3e-19 97.8 66 69.7
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 4.2e-19 97.4 64 70.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 4.2e-19 97.4 65 66.2
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.5e-19 97.1 64 65.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 5.5e-19 97.1 65 67.7
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 5.5e-19 97.1 65 70.8
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 7.2e-19 96.7 65 67.7
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 7.2e-19 96.7 64 67.2
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.2e-19 96.7 65 72.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.2e-19 96.7 65 67.7
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.5e-19 96.3 64 67.2
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.5e-19 96.3 64 67.2
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 9.5e-19 96.3 63 68.3
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 9.5e-19 96.3 65 66.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.2e-18 95.9 65 69.2
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-18 95.9 65 69.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.2e-18 95.9 65 69.2
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.2e-18 95.9 64 67.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.6e-18 95.5 64 65.6
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.6e-18 95.5 64 65.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.6e-18 95.5 64 67.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 2.1e-18 95.1 62 67.7
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-18 95.1 64 65.6
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-18 95.1 64 65.6
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.1e-18 95.1 64 65.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.1e-18 95.1 63 66.7
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.1e-18 95.1 62 67.7
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.8e-18 94.7 65 69.2
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.8e-18 94.7 65 67.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 3.6e-18 94.4 65 66.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 3.6e-18 94.4 65 64.6
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 3.6e-18 94.4 64 64.1
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 3.6e-18 94.4 64 64.1
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 3.6e-18 94.4 65 67.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 4.7e-18 94.0 62 69.4
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 4.7e-18 94.0 65 64.6
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 4.7e-18 94.0 65 64.6
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 4.7e-18 94.0 64 64.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.7e-18 94.0 65 67.7
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 4.7e-18 94.0 64 64.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 6.1e-18 93.6 61 68.9
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.1e-18 93.6 66 66.7
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.1e-18 93.6 66 66.7
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 6.1e-18 93.6 64 65.6
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 6.1e-18 93.6 64 67.2
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 6.1e-18 93.6 64 65.6
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 8.0e-18 93.2 64 65.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 8.0e-18 93.2 64 64.1
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.0e-18 93.2 65 67.7
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.0e-17 92.8 64 64.1
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.4e-17 92.4 64 64.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-17 92.4 65 64.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.4e-17 92.4 65 61.5
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.4e-17 92.4 65 66.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.4e-17 92.4 65 66.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.8e-17 92.0 64 62.5
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 2.3e-17 91.7 64 65.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.0e-17 91.3 65 63.1
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.0e-17 91.3 64 60.9
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.0e-17 91.3 64 60.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.0e-17 91.3 63 65.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.0e-17 91.3 65 64.6
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 3.0e-17 91.3 65 66.2
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.0e-17 91.3 62 67.7
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 4.0e-17 90.9 64 64.1
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 4.0e-17 90.9 66 63.6
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.2e-17 90.5 65 66.2
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 5.2e-17 90.5 65 66.2
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 6.8e-17 90.1 62 64.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 6.8e-17 90.1 72 61.1
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.9e-17 89.7 64 60.9
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.9e-17 89.7 64 60.9
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.9e-17 89.7 64 60.9
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-16 89.4 65 66.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.5e-16 89.0 73 61.6
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.5e-16 89.0 58 70.7
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.5e-16 89.0 58 70.7
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.0e-16 88.6 65 64.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.6e-16 88.2 64 59.4
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.6e-16 88.2 65 60.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.4e-16 87.8 63 65.1
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.4e-16 87.4 65 58.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 5.7e-16 87.0 64 57.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.5e-16 86.7 63 65.1
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 9.8e-16 86.3 64 57.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 9.8e-16 86.3 66 59.1
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.3e-15 85.9 62 64.5
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.7e-15 85.5 65 58.5
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 4.9e-15 84.0 82 51.2
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.3e-15 83.6 64 56.2
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-14 82.4 79 53.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 2.4e-14 81.6 55 63.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 5.4e-14 80.5 64 59.4
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.0e-13 78.6 66 54.5
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-13 77.0 66 56.1
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-12 75.9 65 63.1
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.3e-12 75.9 65 63.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.3e-12 75.9 62 56.5
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.9e-12 74.7 65 55.4
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 5.0e-12 73.9 62 54.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 6.6e-12 73.6 66 54.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 6.6e-12 73.6 65 53.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.1e-10 68.6 61 52.5
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.1e-09 64.7 62 50.0


User provided reference genes

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