Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.8e-152 542.0 279 100.0
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 4.3e-137 491.5 279 90.7
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 4.9e-133 478.0 275 88.7
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 9.2e-132 473.8 272 89.7
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 3.4e-118 428.7 279 81.0
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 3.4e-118 428.7 279 81.4
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 4.4e-118 428.3 279 81.4
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 7.6e-118 427.6 279 80.3
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 9.9e-118 427.2 280 82.1
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 2.2e-117 426.0 279 80.3
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 7.1e-116 421.0 280 79.3
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 2.3e-106 389.4 270 77.4
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 8.4e-93 344.4 262 68.7
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 5.1e-74 282.0 278 60.4
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 1.2e-46 191.0 262 43.1
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 1.6e-46 190.7 265 43.4
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 3.5e-46 189.5 275 41.8
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 3.5e-46 189.5 266 45.5
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 7.7e-46 188.3 283 42.4
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 2.3e-45 186.8 283 40.3
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 8.6e-45 184.9 250 46.0
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 8.6e-45 184.9 275 42.5
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 1.1e-44 184.5 278 39.9
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 1.9e-44 183.7 276 44.6
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.9e-44 183.7 267 42.7
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.9e-44 183.7 246 45.1
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 4.2e-44 182.6 267 42.3
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 4.2e-44 182.6 269 42.0
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 7.2e-44 181.8 261 43.3
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 9.5e-44 181.4 282 40.4
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 9.5e-44 181.4 251 40.6
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 1.2e-43 181.0 177 57.6
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 3.6e-43 179.5 267 42.3
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.6e-43 179.5 246 45.1
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 3.6e-43 179.5 273 41.8
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 6.1e-43 178.7 273 44.3
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.0e-42 177.9 265 41.1
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 1.0e-42 177.9 246 44.3
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 1.4e-42 177.6 276 40.6
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 2.3e-42 176.8 248 44.0
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 3.0e-42 176.4 258 43.8
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 3.0e-42 176.4 262 42.0
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 3.0e-42 176.4 276 40.2
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 4.0e-42 176.0 302 39.4
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 6.8e-42 175.3 286 40.2
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 1.2e-41 174.5 256 43.0
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.2e-41 174.5 299 38.5
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 1.2e-41 174.5 277 39.4
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 1.2e-41 174.5 263 39.5
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 1.5e-41 174.1 288 39.9
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 3.4e-41 172.9 244 43.9
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 7.5e-41 171.8 248 44.4
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 7.5e-41 171.8 272 40.8
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 1.3e-40 171.0 271 43.5
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 1.3e-40 171.0 244 43.9
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.7e-40 170.6 273 42.9
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 1.7e-40 170.6 266 39.8
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 1.7e-40 170.6 257 42.4
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 2.2e-40 170.2 262 39.7
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 2.8e-40 169.9 260 41.2
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.7e-40 169.5 272 40.4
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 3.7e-40 169.5 269 39.0
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.9e-40 169.1 272 42.6
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 6.3e-40 168.7 255 41.6
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 6.3e-40 168.7 251 41.4
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 8.3e-40 168.3 245 42.9
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 8.3e-40 168.3 251 42.2
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 1.4e-39 167.5 273 39.9
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 1.8e-39 167.2 275 42.2
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 1.8e-39 167.2 260 42.7
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 2.4e-39 166.8 260 40.4
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 3.1e-39 166.4 246 41.9
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 3.1e-39 166.4 256 43.4
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 4.1e-39 166.0 271 41.3
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 4.1e-39 166.0 257 42.0
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 4.1e-39 166.0 266 37.6
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 4.1e-39 166.0 263 41.4
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 5.4e-39 165.6 274 42.7
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 7.0e-39 165.2 250 39.6
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 7.0e-39 165.2 246 41.9
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 9.2e-39 164.9 274 42.0
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 9.2e-39 164.9 274 42.0
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 1.2e-38 164.5 275 41.8
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 2.0e-38 163.7 265 41.9
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 2.7e-38 163.3 265 40.0
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 2.7e-38 163.3 271 42.8
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 2.7e-38 163.3 250 40.8
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 2.7e-38 163.3 283 39.2
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 4.5e-38 162.5 259 40.5
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 5.9e-38 162.2 267 40.1
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 5.9e-38 162.2 266 41.0
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 7.8e-38 161.8 270 41.1
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 7.8e-38 161.8 274 41.6
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 7.8e-38 161.8 284 37.3
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 1.3e-37 161.0 275 38.2
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 1.7e-37 160.6 283 38.9
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 2.3e-37 160.2 273 40.3
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 2.3e-37 160.2 272 40.1
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 2.9e-37 159.8 277 40.8
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 2.9e-37 159.8 278 37.8
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 3.8e-37 159.5 284 35.9
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 3.8e-37 159.5 270 38.9
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 3.8e-37 159.5 268 38.1
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 5.0e-37 159.1 272 40.4
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 8.6e-37 158.3 244 41.0
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 1.5e-36 157.5 272 40.1
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 1.5e-36 157.5 272 40.1
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 1.9e-36 157.1 267 40.8
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 1.9e-36 157.1 253 41.5
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 1.2e-35 154.5 192 43.8
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 1.6e-35 154.1 233 42.1
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 3.6e-35 152.9 253 40.3
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 6.1e-35 152.1 242 40.9
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 8.0e-35 151.8 269 38.7
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 8.0e-35 151.8 277 36.8
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 8.0e-35 151.8 208 42.8
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 1.8e-34 150.6 231 43.3
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.8e-34 150.6 268 36.9
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 4.0e-34 149.4 263 40.3
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 5.2e-34 149.1 272 37.9
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 5.2e-34 149.1 223 40.8
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 8.9e-34 148.3 267 36.7
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 2.0e-33 147.1 261 37.9
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 2.0e-33 147.1 265 37.7
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 7.5e-33 145.2 235 40.9
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 9.8e-33 144.8 260 37.3
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 1.7e-32 144.1 235 41.3
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 2.9e-32 143.3 234 40.6
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 8.3e-32 141.7 235 40.9
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 1.8e-31 140.6 243 43.2
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 4.1e-31 139.4 271 39.1
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 9.2e-31 138.3 243 39.1
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 1.2e-30 137.9 305 35.7
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 2.0e-30 137.1 243 39.9
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.6e-30 136.0 290 36.6
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 7.8e-30 135.2 209 44.5
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 7.3e-28 128.6 241 39.0
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 4.7e-27 125.9 124 50.8
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 2.3e-26 123.6 251 37.8
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 2.6e-25 120.2 105 57.1
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 4.4e-25 119.4 259 32.8
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 2.9e-24 116.7 271 35.1
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.1e-23 114.8 234 35.9
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.1e-23 114.8 234 35.9
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.1e-23 112.8 214 38.8
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 5.4e-23 112.5 131 37.4
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 2.7e-22 110.2 93 55.9
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 4.6e-22 109.4 123 48.0
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 3.0e-21 106.7 130 50.0
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 3.0e-21 106.7 130 50.0
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 9.5e-20 101.7 122 45.9
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 2.8e-19 100.1 235 34.0
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 1.3e-16 91.3 94 46.8
THA.LOC104825938 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 1.3e-16 91.3 200 35.5
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 8.3e-16 88.6 113 48.7
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 2.3e-13 80.5 81 45.7
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 1.2e-11 74.7 65 55.4
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 5.2e-10 69.3 135 39.3
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.2e-08 63.9 230 27.8
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 2.2e-08 63.9 173 33.5
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 7.1e-07 58.9 153 31.4


User provided reference genes

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