Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.1e-123 444.1 219 100.0
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.8e-118 427.2 220 95.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.4e-111 406.4 221 92.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.4e-111 404.4 219 91.3
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.6e-101 370.5 225 84.9
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.0e-97 359.4 228 82.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-97 358.2 227 81.1
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-94 349.0 226 79.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.6e-93 344.4 228 78.1
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 8.9e-90 334.0 227 76.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-88 328.6 221 77.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.9e-80 302.4 216 73.6
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 9.3e-79 297.4 222 71.6
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.7e-70 269.2 193 68.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 3.9e-69 265.4 164 75.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.5e-68 263.5 185 70.8
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.9e-68 263.1 151 80.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.5e-68 262.7 188 70.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.3e-68 261.9 185 70.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 7.4e-68 261.2 193 67.4
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 9.6e-68 260.8 219 63.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.6e-68 260.8 174 70.1
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.1e-67 259.6 185 66.5
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 8.1e-67 257.7 166 72.9
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 8.1e-67 257.7 166 72.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 8.1e-67 257.7 166 72.9
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.4e-66 256.9 184 66.8
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.4e-66 256.9 186 66.1
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.4e-66 256.9 172 71.5
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.4e-66 256.1 169 71.0
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.1e-66 255.8 207 62.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.1e-66 255.8 217 60.4
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.0e-66 255.4 165 70.3
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 5.3e-66 255.0 175 68.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 6.9e-66 254.6 162 71.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.9e-66 254.6 203 63.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 6.9e-66 254.6 206 61.7
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 6.9e-66 254.6 173 70.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.6e-65 252.7 146 78.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.4e-65 252.3 151 76.8
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.4e-65 252.3 184 67.9
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.5e-65 251.9 146 76.0
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 4.5e-65 251.9 168 72.0
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 4.5e-65 251.9 171 67.8
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 5.8e-65 251.5 173 69.9
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 7.6e-65 251.1 169 70.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 7.6e-65 251.1 209 61.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.6e-65 251.1 171 67.8
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 7.6e-65 251.1 151 75.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.3e-64 250.4 149 75.2
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.3e-64 250.4 214 58.9
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-64 250.0 140 87.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.7e-64 250.0 168 70.8
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.2e-64 249.6 152 77.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.8e-64 248.8 164 71.3
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 3.8e-64 248.8 185 64.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 6.5e-64 248.1 166 69.9
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 6.5e-64 248.1 192 62.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.2e-63 245.7 170 70.0
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 4.2e-63 245.4 206 58.7
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 5.5e-63 245.0 144 77.8
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 5.5e-63 245.0 161 72.7
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.1e-63 244.6 203 62.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.5e-62 242.3 160 68.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.0e-62 241.5 207 58.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 6.0e-62 241.5 168 67.3
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.0e-61 240.7 162 66.0
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-61 240.4 186 63.4
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.3e-61 240.4 186 61.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-61 240.4 198 59.1
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.8e-61 240.0 207 58.0
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 3.0e-61 239.2 155 72.9
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.9e-61 238.8 144 75.7
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 6.7e-61 238.0 151 70.9
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.3e-60 235.7 227 55.1
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.4e-60 234.6 167 67.1
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 9.6e-60 234.2 141 73.8
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 9.6e-60 234.2 174 64.4
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 9.6e-60 234.2 174 64.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 9.6e-60 234.2 138 76.1
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.1e-59 233.0 168 66.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.7e-59 232.3 193 60.6
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.7e-59 232.3 256 50.8
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-58 230.7 168 63.1
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.4e-58 229.6 181 63.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.4e-58 229.6 168 61.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.3e-58 228.4 187 59.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.0e-57 226.5 200 56.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.5e-57 225.3 136 74.3
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.5e-57 225.3 178 61.8
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 7.6e-57 224.6 153 69.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.2e-56 223.0 146 72.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.2e-56 223.0 167 63.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-56 222.2 152 65.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.0e-56 221.9 257 49.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 5.0e-56 221.9 201 56.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.4e-55 220.3 216 50.9
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.9e-55 219.9 210 55.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.2e-54 217.2 185 61.1
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-54 216.9 154 64.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 7.9e-54 214.5 160 62.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.8e-53 213.4 131 74.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.7e-53 211.5 216 47.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 8.7e-53 211.1 223 51.6
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-52 210.7 149 62.4
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 4.3e-52 208.8 147 61.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 4.3e-52 208.8 147 61.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 5.7e-52 208.4 230 45.7
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 5.7e-52 208.4 230 45.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 5.7e-52 208.4 194 56.7
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.7e-52 207.6 158 59.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.7e-52 207.6 214 50.5
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.3e-51 207.2 128 70.3
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.3e-51 207.2 147 61.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.6e-51 206.8 147 60.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.2e-51 206.5 123 74.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.8e-51 206.1 147 59.9
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.8e-50 203.4 144 65.3
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.3e-50 201.8 168 57.7
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.0e-49 199.9 181 57.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.5e-49 198.7 147 58.5
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.5e-49 198.7 147 58.5
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.9e-49 198.4 157 60.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 7.7e-49 198.0 147 58.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.2e-48 196.4 187 52.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 8.5e-48 194.5 113 72.6
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-46 188.3 331 36.3
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.4e-45 187.2 142 57.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.9e-45 185.7 143 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 8.8e-45 184.5 142 56.3
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.8e-42 176.8 136 61.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.1e-42 176.0 196 50.0
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.1e-42 174.5 106 72.6
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 4.5e-41 172.2 138 54.3
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.7e-41 171.4 206 48.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.0e-40 171.0 105 73.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.9e-39 166.8 139 61.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.5e-39 166.4 143 45.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.5e-39 165.2 161 54.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.0e-37 161.0 203 47.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.8e-37 160.2 124 54.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.0e-37 159.5 90 74.4
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-36 156.8 90 74.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.1e-30 136.7 125 56.0
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.7e-30 136.3 104 62.5
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.7e-30 135.6 151 43.0
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 4.0e-29 132.5 178 44.9
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 8.8e-29 131.3 140 51.4
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.2e-28 131.0 141 41.1
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.6e-28 129.8 142 52.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-27 127.5 152 45.4
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.3e-27 127.5 107 57.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 6.3e-27 125.2 102 61.8
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-26 124.4 124 53.2
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 7.0e-26 121.7 64 78.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 3.5e-25 119.4 164 37.2
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 2.9e-24 116.3 116 59.5
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-23 113.2 81 61.7
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.1e-22 110.2 65 70.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-17 94.4 93 52.7
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 5.0e-16 89.0 55 76.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 3.0e-13 79.7 85 48.2
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.2e-11 73.6 47 68.1
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 6.3e-11 72.0 50 62.0
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-11 71.6 83 48.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-10 71.2 48 62.5
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.4e-10 70.1 62 56.5
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-09 67.4 85 48.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 2.7e-09 66.6 63 52.4
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 3.3e-07 59.7 154 29.9


User provided reference genes

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