Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.0e-143 513.5 268 100.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.5e-118 429.1 272 85.7
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.6e-117 426.4 268 82.5
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.7e-111 406.4 276 82.6
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.8e-108 394.4 266 81.2
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-105 387.1 273 78.0
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 3.2e-105 385.6 273 77.7
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.6e-104 383.3 270 77.8
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 4.6e-104 381.7 270 77.4
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 2.5e-102 375.9 267 76.8
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.1e-101 372.9 268 76.9
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 2.5e-86 322.8 259 68.3
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.3e-86 322.4 260 67.3
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.4e-81 307.0 261 66.7
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.2e-81 305.8 271 59.0
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 1.6e-80 303.5 255 67.1
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 4.6e-80 302.0 262 63.7
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.9e-79 298.9 251 66.9
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 3.9e-79 298.9 254 64.6
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.1e-79 298.5 258 62.8
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 8.7e-79 297.7 272 61.8
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-78 297.4 251 66.1
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.9e-78 296.6 257 66.1
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 7.4e-78 294.7 264 64.0
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 9.6e-78 294.3 257 64.2
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 4.0e-76 288.9 254 62.6
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-73 280.8 254 61.0
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 1.1e-73 280.8 254 61.0
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.5e-73 279.6 260 60.0
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 9.0e-68 261.2 251 61.0
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 3.8e-66 255.8 248 58.5
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.5e-41 172.2 249 42.2
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.6e-40 170.6 249 42.6
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-37 160.6 259 42.1
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 1.7e-37 160.6 259 42.1
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 3.7e-37 159.5 263 41.4
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 6.3e-37 158.7 255 38.8
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.1e-36 157.9 258 38.4
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.4e-36 157.5 239 38.9
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 1.8e-36 157.1 249 41.8
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 1.8e-36 157.1 249 41.8
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.8e-36 157.1 253 43.1
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.4e-36 156.8 254 41.7
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 4.1e-36 156.0 259 41.7
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 4.1e-36 156.0 259 41.7
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 7.0e-36 155.2 254 40.9
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-35 154.1 256 41.4
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 7.7e-35 151.8 254 40.6
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.7e-34 150.6 255 37.6
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 3.2e-33 146.4 255 39.6
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 5.5e-33 145.6 255 38.4
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.2e-33 145.2 255 38.4
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-32 144.4 253 38.7
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-32 144.4 253 38.7
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 1.2e-32 144.4 247 38.1
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.1e-32 143.7 251 39.8
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 2.7e-32 143.3 257 36.2
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.8e-31 140.6 257 40.9
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.8e-31 140.6 244 40.6
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.3e-31 140.2 255 37.6
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.3e-31 140.2 249 36.5
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 5.2e-31 139.0 249 39.4
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 5.2e-31 139.0 249 39.4
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.2e-30 137.9 249 36.1
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 2.6e-30 136.7 255 39.2
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.6e-30 136.7 251 37.5
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.4e-30 136.0 253 37.2
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.4e-30 136.0 255 35.3
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 5.7e-30 135.6 254 37.8
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 9.7e-30 134.8 247 40.1
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.7e-30 134.8 245 35.9
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 1.3e-29 134.4 253 37.5
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.8e-29 133.3 253 34.8
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.8e-29 132.5 255 36.1
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 6.3e-29 132.1 255 38.0
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 6.3e-29 132.1 246 37.0
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 5.3e-28 129.0 251 34.3
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 9.1e-28 128.3 266 39.5
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.2e-27 127.9 246 35.0
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.2e-27 127.9 259 35.9
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.7e-27 126.7 251 36.3
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.0e-26 124.8 250 38.0
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 1.3e-26 124.4 256 35.5
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 5.0e-26 122.5 260 37.7
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 1.9e-25 120.6 252 37.7
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.2e-24 117.9 255 37.3
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.7e-24 116.7 250 36.0
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 4.7e-24 115.9 141 46.1
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 6.8e-23 112.1 248 35.1
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 1.5e-22 110.9 261 34.1
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 4.4e-22 109.4 145 44.1
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.7e-21 107.5 257 31.9
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 2.8e-21 106.7 257 35.4
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 3.7e-21 106.3 258 32.6
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 8.3e-21 105.1 267 33.3
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 1.8e-20 104.0 265 33.2
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 7.0e-20 102.1 254 34.3
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 1.2e-19 101.3 248 33.5
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 7.7e-19 98.6 243 31.3
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 7.7e-19 98.6 237 31.6
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.7e-18 97.4 257 31.5
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 5.0e-18 95.9 249 32.5
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 8.6e-18 95.1 243 33.3
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 1.2e-16 91.3 139 35.3
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 2.8e-16 90.1 249 30.9
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.6e-16 89.7 243 32.1
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 4.7e-16 89.4 244 32.4
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 2.3e-15 87.0 244 31.6
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 2.3e-15 87.0 250 32.4
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.2e-14 84.7 259 32.0
CAN.G449.55 Capsicum annuum HOM05D002137 ORTHO05D002144 1.5e-14 84.3 238 29.4
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 2.6e-14 83.6 98 44.9
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.6e-14 83.6 254 29.5
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 2.6e-14 83.6 241 32.0
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 3.4e-14 83.2 246 32.5
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 4.4e-14 82.8 260 30.8
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 4.4e-14 82.8 245 31.4
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 5.7e-14 82.4 252 31.7
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 5.7e-14 82.4 247 27.5
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 9.8e-14 81.6 259 27.0
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 1.3e-13 81.3 180 32.2
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 3.7e-13 79.7 242 31.0
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 4.9e-13 79.3 255 29.0
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 2.4e-12 77.0 254 31.1
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 3.2e-12 76.6 247 28.7
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 4.1e-12 76.3 260 31.2
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 5.4e-12 75.9 175 34.3
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 7.0e-12 75.5 251 29.5
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.2e-11 74.7 246 31.7
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.2e-11 74.7 254 29.9
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.2e-11 74.7 246 31.3
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.6e-11 74.3 246 29.7
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 5.9e-11 72.4 244 29.5
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.3e-10 71.2 246 28.9
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.7e-10 70.9 180 28.3
MSTRG.11657 Avicennia marina HOM05D002137 ORTHO05D002144 2.9e-10 70.1 267 27.0
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 2.9e-10 70.1 180 28.3
unitig_88.g27680 Utricularia gibba HOM05D002137 ORTHO05D002144 6.6e-10 68.9 238 27.7
Eucgr.J02856 Eucalyptus grandis HOM05D002137 ORTHO05D002144 8.6e-10 68.6 177 27.7
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 1.1e-09 68.2 269 27.1
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 1.5e-09 67.8 208 29.3
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 1.5e-09 67.8 208 29.3
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 1.5e-09 67.8 208 29.3
CSS0050252 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.5e-09 67.8 185 27.6
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 1.9e-09 67.4 189 27.5
Lsat_1_v5_gn_3_24501 Lactuca sativa HOM05D002137 ORTHO05D002144 2.5e-09 67.0 213 27.7
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 4.3e-09 66.2 208 28.8
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 4.3e-09 66.2 208 28.8
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 4.3e-09 66.2 102 39.2
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 5.6e-09 65.9 171 29.2
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 7.3e-09 65.5 180 27.2
Migut.A00132 Erythranthe guttata HOM05D002137 ORTHO05D002144 9.5e-09 65.1 236 28.0
MSTRG.25949 Avicennia marina HOM05D002137 ORTHO05D002144 1.6e-08 64.3 201 27.4
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 3.6e-08 63.2 156 29.5
HanXRQChr06g0173871 Helianthus annuus HOM05D002137 ORTHO05D002144 4.0e-07 59.7 159 28.3
THA.LOC104813947 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 4.0e-07 59.7 176 26.7
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 6.8e-07 58.9 202 27.2
Prupe.3G049400 Prunus persica HOM05D002137 ORTHO05D002144 6.8e-07 58.9 168 25.0
Cc08_g10660 Coffea canephora HOM05D002137 ORTHO05D002144 8.9e-07 58.5 219 26.5
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 5.8e-06 55.8 192 26.0
Lj3g0017057 Lotus japonicus HOM05D002137 ORTHO05D002144 9.8e-06 55.1 159 27.7
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 9.8e-06 55.1 205 30.7


User provided reference genes

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