Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 7.4e-69 263.8 143 100.0
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 1.5e-61 239.6 153 88.9
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 1.4e-51 206.5 151 77.5
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 5.0e-49 198.0 151 75.5
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 3.7e-44 181.8 156 72.4
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 4.8e-44 181.4 152 73.0
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 6.1e-39 164.5 155 68.4
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 6.1e-39 164.5 155 68.4
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 1.0e-38 163.7 156 67.3
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 5.2e-38 161.4 156 66.7
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 1.2e-31 140.2 154 61.0
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 1.4e-27 126.7 145 57.9
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 1.0e-25 120.6 154 52.6
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 1.7e-25 119.8 157 51.6
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 3.0e-25 119.0 153 53.6
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 4.3e-24 115.2 159 49.7
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 5.6e-24 114.8 165 47.9
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 1.6e-23 113.2 177 46.9
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 2.1e-23 112.8 148 51.4
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 3.6e-23 112.1 167 47.9
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 6.2e-23 111.3 167 49.1
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 1.1e-22 110.5 147 51.0
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 2.3e-22 109.4 157 49.7
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 5.2e-22 108.2 165 46.7
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 6.8e-22 107.8 167 47.3
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 6.8e-22 107.8 160 50.6
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 1.5e-21 106.7 150 51.3
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 2.0e-21 106.3 161 46.6
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 2.0e-21 106.3 162 48.1
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 3.4e-21 105.5 175 45.7
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 7.5e-21 104.4 151 50.3
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 7.5e-21 104.4 175 45.1
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 9.8e-21 104.0 160 50.0
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.7e-20 103.2 157 44.6
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 2.2e-20 102.8 148 48.6
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 2.9e-20 102.4 179 45.8
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 3.7e-20 102.1 155 43.2
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 3.7e-20 102.1 160 47.5
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 4.9e-20 101.7 157 43.9
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 6.4e-20 101.3 164 46.3
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 1.1e-19 100.5 170 48.2
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 1.1e-19 100.5 173 45.1
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 1.1e-19 100.5 178 44.4
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 1.4e-19 100.1 170 47.6
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 1.4e-19 100.1 160 45.6
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 3.2e-19 99.0 152 47.4
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 5.4e-19 98.2 176 42.0
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 9.2e-19 97.4 157 46.5
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 1.2e-18 97.1 156 46.8
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.6e-18 96.7 155 49.0
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 1.6e-18 96.7 154 43.5
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 2.1e-18 96.3 149 46.3
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 2.1e-18 96.3 151 49.7
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 2.7e-18 95.9 158 44.9
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.6e-18 95.1 159 49.1
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 4.6e-18 95.1 153 45.8
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 6.0e-18 94.7 155 49.0
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 7.8e-18 94.4 152 44.7
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.3e-17 93.6 153 45.1
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 3.9e-17 92.0 160 46.2
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 8.6e-17 90.9 163 41.7
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 8.6e-17 90.9 154 41.6
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 1.1e-16 90.5 175 40.0
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 1.1e-16 90.5 167 40.7
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.9e-16 89.7 155 47.7
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 3.3e-16 89.0 167 40.7
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 3.3e-16 89.0 150 44.7
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 7.3e-16 87.8 157 43.3
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 1.2e-15 87.0 167 41.3
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 3.1e-14 82.4 159 39.6
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 8.9e-14 80.9 170 38.8
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 1.2e-13 80.5 153 41.2
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 1.5e-13 80.1 184 39.7
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 2.0e-13 79.7 184 39.1
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 2.0e-13 79.7 185 39.5
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 1.3e-12 77.0 157 40.1
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 1.7e-12 76.6 159 40.3
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 8.3e-12 74.3 138 45.7
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 2.4e-11 72.8 153 39.2
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 3.2e-11 72.4 137 41.6
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 9.2e-11 70.9 149 38.3
HanXRQChr04g0121781 Helianthus annuus HOM05D007580 ORTHO05D009620 1.6e-10 70.1 145 36.6
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 3.5e-10 68.9 137 39.4
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 1.7e-09 66.6 87 50.6
SGA_v2.0_scaffold95G28871 Striga asiatica HOM05D007580 ORTHO05D009620 8.6e-09 64.3 161 36.0
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 1.1e-08 63.9 162 35.8
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 4.3e-08 62.0 138 41.3
MBI12_g06406_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 9.5e-08 60.8 145 36.6
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 9.5e-08 60.8 77 49.4
MBI12_g45243_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 2.8e-07 59.3 145 36.6
Ah.05g176020 Amaranthus hybridus HOM05D007580 ORTHO05D009620 8.9e-06 54.3 151 35.1


User provided reference genes

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