Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G10210 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.0e-24 115.9 57 100.0
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 4.2e-15 84.0 39 100.0
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 1.2e-14 82.4 39 97.4
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.2e-14 82.4 39 97.4
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 1.2e-14 82.4 39 97.4
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.6e-14 82.0 39 97.4
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 6.1e-14 80.1 39 94.9
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-13 79.3 39 94.9
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-13 79.3 39 94.9
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.0e-13 79.3 39 94.9
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 1.0e-13 79.3 39 94.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 3.9e-13 77.4 39 92.3
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 1.3e-11 72.4 38 84.2
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 2.2e-11 71.6 41 78.0
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 3.7e-11 70.9 39 76.9
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.7e-11 70.9 39 84.6
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 4.8e-11 70.5 39 79.5
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 8.2e-11 69.7 39 79.5
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 1.1e-10 69.3 39 79.5
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.8e-10 68.6 39 76.9
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 1.8e-10 68.6 39 76.9
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 2.4e-10 68.2 39 76.9
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 3.1e-10 67.8 39 74.4
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 4.1e-10 67.4 39 76.9
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 4.1e-10 67.4 39 76.9
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 6.9e-10 66.6 38 78.9
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 9.1e-10 66.2 39 74.4
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 1.5e-09 65.5 42 69.0
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 1.5e-09 65.5 39 74.4
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 2.6e-09 64.7 39 71.8
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 2.6e-09 64.7 39 71.8
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 2.6e-09 64.7 39 71.8
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 2.6e-09 64.7 39 74.4
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 2.6e-09 64.7 39 71.8
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 3.4e-09 64.3 41 70.7
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 3.4e-09 64.3 39 71.8
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 3.4e-09 64.3 39 71.8
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 4.5e-09 63.9 39 69.2
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 5.9e-09 63.5 39 71.8
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 5.9e-09 63.5 38 73.7
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 5.9e-09 63.5 39 74.4
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 5.9e-09 63.5 39 74.4
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 5.9e-09 63.5 39 74.4
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 7.7e-09 63.2 39 76.9
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 7.7e-09 63.2 39 71.8
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 7.7e-09 63.2 51 58.8
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.7e-09 63.2 38 73.7
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 7.7e-09 63.2 38 73.7
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 7.7e-09 63.2 39 69.2
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 7.7e-09 63.2 39 69.2
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 7.7e-09 63.2 39 69.2
arahy.Tifrunner.gnm1.ann1.ZVY5TW Arachis hypogaea HOM05D003351 ORTHO05D003806 1.0e-08 62.8 39 71.8
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 1.0e-08 62.8 37 75.7
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 1.0e-08 62.8 39 69.2
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.0e-08 62.8 38 73.7
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 1.0e-08 62.8 39 69.2
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.0e-08 62.8 38 71.1
arahy.Tifrunner.gnm1.ann1.KB1I4I Arachis hypogaea HOM05D003351 ORTHO05D003806 1.3e-08 62.4 38 73.7
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.3e-08 62.4 39 69.2
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 1.3e-08 62.4 38 71.1
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 1.7e-08 62.0 38 71.1
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.7e-08 62.0 39 66.7
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.7e-08 62.0 39 66.7
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 1.7e-08 62.0 39 71.8
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 1.7e-08 62.0 39 71.8
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 2.2e-08 61.6 39 69.2
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 2.2e-08 61.6 38 68.4
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 2.2e-08 61.6 39 66.7
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 2.2e-08 61.6 39 69.2
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 2.2e-08 61.6 39 69.2
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 2.2e-08 61.6 39 74.4
arahy.Tifrunner.gnm1.ann1.6AK6JC Arachis hypogaea HOM05D003351 ORTHO05D003806 2.9e-08 61.2 39 69.2
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 2.9e-08 61.2 45 66.7
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 2.9e-08 61.2 45 66.7
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 2.9e-08 61.2 39 74.4
MD01G1058900 Malus domestica HOM05D003351 ORTHO05D003806 3.8e-08 60.8 39 66.7
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 3.8e-08 60.8 39 69.2
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 3.8e-08 60.8 39 69.2
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 5.0e-08 60.5 36 77.8
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 71.8
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 71.8
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 71.8
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 71.8
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 71.8
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 66.7
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 5.0e-08 60.5 38 71.1
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 69.2
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 5.0e-08 60.5 39 69.2
arahy.Tifrunner.gnm1.ann1.KX913X Arachis hypogaea HOM05D003351 ORTHO05D003806 6.5e-08 60.1 39 69.2
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 6.5e-08 60.1 39 66.7
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 8.5e-08 59.7 41 65.9
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 1.1e-07 59.3 39 66.7
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.1e-07 59.3 39 69.2
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.1e-07 59.3 39 66.7
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 1.1e-07 59.3 39 66.7
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 1.4e-07 58.9 40 65.0
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 1.4e-07 58.9 39 69.2
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 1.4e-07 58.9 40 65.0
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.9e-07 58.5 39 64.1
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 1.9e-07 58.5 39 69.2
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 2.5e-07 58.2 38 68.4
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 3.2e-07 57.8 39 66.7
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 3.2e-07 57.8 38 65.8
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 3.2e-07 57.8 38 68.4
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 4.2e-07 57.4 39 66.7
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 4.2e-07 57.4 39 64.1
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 4.2e-07 57.4 38 65.8
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 5.5e-07 57.0 38 68.4
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 5.5e-07 57.0 39 69.2
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 7.2e-07 56.6 39 66.7
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 7.2e-07 56.6 38 65.8
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 7.2e-07 56.6 38 68.4
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 9.4e-07 56.2 41 63.4
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 9.4e-07 56.2 66 45.5
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 1.2e-06 55.8 38 65.8
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 1.2e-06 55.8 39 61.5
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 1.6e-06 55.5 38 65.8
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 1.6e-06 55.5 38 60.5
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 2.1e-06 55.1 38 63.2
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 2.1e-06 55.1 39 61.5
arahy.Tifrunner.gnm1.ann1.74QZJ8 Arachis hypogaea HOM05D003351 ORTHO05D003806 2.7e-06 54.7 45 64.4
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 2.7e-06 54.7 38 65.8
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 2.7e-06 54.7 38 63.2
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 3.6e-06 54.3 39 64.1
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 3.6e-06 54.3 38 57.9
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 3.6e-06 54.3 38 63.2
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 4.7e-06 53.9 43 67.4
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 7.9e-06 53.1 39 56.4
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 7.9e-06 53.1 39 59.0
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 7.9e-06 53.1 39 59.0
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 7.9e-06 53.1 39 56.4


User provided reference genes

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