Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.6e-288 995.3 492 100.0
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.2e-270 936.0 492 92.9
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 3.5e-267 924.5 492 91.9
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 4.6e-259 897.5 493 89.5
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 1.0e-258 896.3 493 89.7
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 1.0e-258 896.3 493 89.7
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 3.9e-258 894.4 493 89.2
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.1e-257 892.9 492 89.4
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 6.2e-256 887.1 454 96.3
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.7e-245 852.4 495 85.3
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 1.0e-242 843.2 492 84.3
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 9.9e-238 826.6 524 78.8
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 4.3e-225 784.6 506 78.7
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 6.2e-224 780.8 492 80.7
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 5.4e-220 767.7 493 77.3
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 1.1e-215 753.4 490 72.0
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.4e-215 753.1 490 72.2
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.5e-214 749.6 490 71.4
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 1.9e-212 742.7 413 89.8
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.3e-210 736.5 490 70.8
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 2.8e-208 728.8 489 68.9
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 3.7e-208 728.4 483 71.4
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 3.7e-208 728.4 487 70.0
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.4e-207 726.5 510 73.9
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.4e-207 725.7 491 70.5
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.7e-205 719.5 466 72.3
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 1.4e-204 716.5 488 69.9
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 2.3e-202 709.1 489 68.5
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 3.0e-202 708.8 490 68.6
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 5.1e-202 708.0 491 68.4
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 2.2e-200 702.6 490 68.0
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 4.8e-200 701.4 480 70.2
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 6.3e-200 701.0 488 68.0
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.4e-199 699.9 490 69.2
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 9.0e-199 697.2 491 67.4
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 1.5e-198 696.4 490 67.1
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 4.5e-198 694.9 491 67.8
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 7.7e-198 694.1 487 67.1
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.0e-197 693.7 491 69.0
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.3e-197 693.3 468 69.9
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 2.9e-197 692.2 488 67.2
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 3.8e-197 691.8 491 67.0
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.4e-196 689.9 481 67.4
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.9e-196 689.5 488 68.9
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 7.2e-196 687.6 492 65.9
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 9.4e-196 687.2 488 66.6
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 2.1e-195 686.0 489 66.1
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 2.1e-195 686.0 469 70.1
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.7e-195 685.6 488 67.0
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 7.9e-195 684.1 491 67.0
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 1.8e-194 682.9 487 66.3
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 3.9e-194 681.8 541 62.8
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.5e-193 679.9 489 66.1
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.3e-193 678.7 488 66.6
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 5.7e-193 677.9 489 65.4
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 1.7e-192 676.4 541 62.3
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 2.4e-191 672.5 489 65.0
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.1e-191 671.8 468 68.6
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 5.9e-190 667.9 467 68.3
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-189 667.2 505 65.3
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-189 667.2 505 65.3
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.0e-189 667.2 505 65.3
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 1.0e-189 667.2 490 66.7
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.9e-189 665.6 494 64.4
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.1e-188 663.7 505 65.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.1e-188 663.7 489 64.6
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 2.5e-188 662.5 490 63.9
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 2.1e-187 659.4 490 66.3
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.4e-186 656.8 490 62.4
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 1.5e-185 653.3 458 67.9
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.4e-180 636.7 482 61.6
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 2.1e-179 632.9 521 61.6
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 1.0e-178 630.6 433 71.6
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 3.3e-177 625.5 482 62.2
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 4.4e-177 625.2 490 61.2
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 1.3e-176 623.6 516 59.9
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 6.3e-176 621.3 490 62.9
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 5.9e-174 614.8 606 54.0
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 8.5e-173 610.9 477 61.4
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 7.5e-169 597.8 497 60.4
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.1e-167 592.4 529 57.7
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.9e-164 583.2 469 62.0
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 2.5e-164 582.8 488 56.1
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 6.1e-163 578.2 469 67.0
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 9.1e-159 564.3 394 66.8
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 9.5e-156 554.3 407 64.4
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.2e-155 553.9 513 55.0
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.6e-153 546.2 425 64.2
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 2.7e-150 536.2 397 63.7
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 1.4e-146 523.9 490 54.3
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 7.0e-143 511.5 484 51.4
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 5.6e-140 501.9 482 51.0
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 1.2e-139 500.7 483 48.9
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 8.0e-139 498.0 328 72.3
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 7.5e-137 491.5 331 71.6
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 7.5e-137 491.5 329 73.3
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 4.6e-134 482.3 684 42.1
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 2.3e-133 479.9 526 51.3
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.4e-130 470.7 485 52.8
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 8.3e-128 461.5 444 52.0
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 2.6e-113 413.3 312 65.1
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.0e-109 399.8 982 30.3
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 2.5e-108 396.7 347 58.2
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 1.9e-100 370.5 431 48.7
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 4.6e-94 349.4 499 42.3
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 9.3e-87 325.1 250 65.2
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 4.5e-81 306.2 555 35.3
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.2e-75 285.4 196 72.4
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 6.9e-74 282.3 309 51.5
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 6.7e-69 265.8 493 36.1
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.5e-63 246.1 196 65.3
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 1.1e-58 231.9 183 57.9
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 8.8e-53 212.2 161 62.7
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.5e-47 194.9 161 64.0
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 3.6e-38 163.7 116 69.0
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 2.3e-32 144.4 113 55.8
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 4.4e-28 130.2 155 44.5
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 4.6e-25 120.2 65 78.5
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 4.7e-22 110.2 82 69.5
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.7e-16 91.7 66 66.7
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 1.2e-14 85.5 79 44.3
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.8e-14 84.3 101 45.5
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.4e-13 82.0 43 83.7
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.5e-12 78.6 80 50.0
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 8.4e-11 72.8 44 70.5
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 5.4e-10 70.1 286 24.1
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 1.0e-08 65.9 49 61.2
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 6.6e-08 63.2 273 27.8
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.9e-07 61.6 281 25.3
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 3.3e-07 60.8 286 25.9
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.3e-07 60.8 290 26.9
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 3.3e-07 60.8 214 29.9
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.2e-06 58.9 294 24.8
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.1e-06 58.2 222 27.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.8e-06 57.8 294 24.8
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 3.6e-06 57.4 284 21.5


User provided reference genes

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