Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.4e-104 381.7 199 100.0
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.0e-97 358.2 246 80.5
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 7.6e-88 327.4 245 72.7
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 4.9e-87 324.7 244 74.2
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 4.2e-86 321.6 244 72.1
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.5e-85 318.5 242 73.6
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.0e-84 317.0 244 71.3
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.3e-84 315.8 242 71.5
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.6e-82 309.7 248 71.8
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.6e-80 302.4 251 69.7
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.8e-79 298.5 249 69.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 4.2e-78 295.0 249 68.7
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.8e-76 289.7 251 66.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.0e-63 247.3 234 58.5
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 3.8e-63 245.4 238 59.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.5e-62 241.5 140 87.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.6e-61 240.0 235 57.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.1e-61 239.6 165 74.5
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.8e-60 236.5 238 56.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.8e-60 236.5 236 58.1
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.8e-58 228.4 169 69.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-57 226.5 236 55.9
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.8e-57 226.5 238 55.9
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.2e-55 219.5 233 56.7
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 4.2e-54 215.3 238 55.0
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 5.5e-54 214.9 233 55.8
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 5.5e-54 214.9 233 55.8
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 8.8e-52 207.6 234 55.1
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.3e-47 193.7 221 49.8
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 3.2e-46 189.1 163 58.9
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.7e-45 186.0 155 61.9
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.7e-45 185.3 226 48.2
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 6.1e-45 184.9 154 60.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.0e-44 184.1 231 48.5
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.4e-44 183.7 156 59.0
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 3.0e-44 182.6 158 57.0
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 5.2e-44 181.8 159 57.9
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 5.2e-44 181.8 168 56.5
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 8.8e-44 181.0 238 46.2
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.5e-43 180.3 154 59.1
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 4.4e-43 178.7 239 46.9
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 4.4e-43 178.7 156 59.0
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 9.7e-43 177.6 230 44.8
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 9.7e-43 177.6 234 47.0
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.3e-42 177.2 232 48.3
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.7e-42 176.8 162 58.0
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 2.8e-42 176.0 165 57.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 3.7e-42 175.6 155 60.0
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 6.3e-42 174.9 193 53.9
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 8.2e-42 174.5 159 56.6
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.1e-41 174.1 238 47.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.4e-41 173.7 240 45.4
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 3.1e-41 172.6 171 56.1
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.1e-41 172.6 167 57.5
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 3.1e-41 172.6 167 58.1
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 9.1e-41 171.0 169 56.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.6e-40 170.2 163 55.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.0e-40 169.9 161 55.3
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.0e-40 169.9 160 53.1
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.0e-40 169.9 162 55.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 3.5e-40 169.1 236 43.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.5e-40 168.7 156 58.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 7.7e-40 167.9 161 57.8
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 7.7e-40 167.9 161 54.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 1.7e-39 166.8 172 52.9
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.7e-39 166.8 172 52.9
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.7e-39 166.8 164 54.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.9e-39 166.0 160 58.8
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 3.8e-39 165.6 165 53.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.8e-39 165.6 160 56.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 5.0e-39 165.2 173 52.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 8.5e-39 164.5 160 55.6
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 8.5e-39 164.5 167 56.3
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.5e-38 163.7 249 41.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 3.2e-38 162.5 149 57.0
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 5.5e-38 161.8 158 53.8
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 5.5e-38 161.8 160 55.0
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 9.4e-38 161.0 224 43.8
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.2e-37 160.6 165 50.9
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.7e-37 159.5 179 50.8
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.7e-37 158.7 155 56.1
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 8.0e-37 157.9 156 54.5
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 8.0e-37 157.9 222 45.5
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.4e-36 157.1 228 42.1
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 2.3e-36 156.4 175 52.0
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.8e-36 154.8 175 50.3
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.6e-35 152.9 162 49.4
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.4e-35 152.1 153 53.6
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 7.5e-35 151.4 155 52.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.8e-35 151.0 202 45.0
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.8e-33 146.7 113 60.2
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 5.4e-33 145.2 255 39.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.2e-32 144.1 159 50.9
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.6e-32 143.7 90 73.3
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.0e-32 143.3 109 59.6
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.7e-32 142.9 156 50.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.5e-32 142.1 165 44.8
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 7.7e-32 141.4 142 52.8
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.0e-31 141.0 163 49.1
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.0e-31 141.0 165 46.7
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.3e-31 140.6 197 44.7
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.8e-31 139.0 218 41.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 8.5e-31 137.9 158 46.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 8.5e-31 137.9 86 69.8
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.0e-28 131.0 107 58.9
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.0e-28 131.0 107 58.9
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.0e-27 126.7 70 78.6
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.6e-27 126.3 167 44.9
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 6.3e-26 121.7 146 45.2
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 3.1e-25 119.4 119 53.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.2e-24 117.5 169 42.0
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.3e-23 114.0 83 60.2
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.8e-23 112.5 152 42.8
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.1e-22 110.9 85 60.0
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 5.6e-22 108.6 145 41.4
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 9.5e-22 107.8 83 57.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.0e-20 104.4 110 44.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.8e-20 103.6 81 58.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 6.8e-20 101.7 59 74.6
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.4e-19 99.0 83 50.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 2.4e-17 93.2 194 40.2
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.3e-15 86.7 79 48.1
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.1e-14 84.3 117 42.7
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.6e-13 79.3 53 67.9
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 6.4e-10 68.6 96 39.6
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 7.8e-08 61.6 105 36.2
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.9e-07 59.3 58 55.2


User provided reference genes

Program Settings