Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL158U10010 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 1.4e-20 102.4 70 100.0
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 1.4e-20 102.4 70 100.0
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 5.0e-18 94.0 70 94.3
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 8.5e-18 93.2 69 92.8
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.4e-17 92.4 71 90.1
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.9e-17 92.0 70 92.9
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 4.7e-16 87.4 69 84.1
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 4.7e-16 87.4 69 84.1
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 1.4e-15 85.9 69 85.5
BcaB03g14900 Brassica carinata HOM05D003679 ORTHO05D004265 2.0e-14 82.0 70 80.0
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 2.0e-14 82.0 69 84.1
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 2.0e-14 82.0 69 84.1
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 2.6e-14 81.6 69 69.6
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.2e-13 78.6 69 84.1
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 4.8e-13 77.4 70 85.7
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 1.8e-12 75.5 69 66.7
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 1.8e-12 75.5 70 74.3
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 1.2e-11 72.8 77 70.1
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 2.0e-11 72.0 75 78.7
BcaC08g46576 Brassica carinata HOM05D003679 ORTHO05D004265 5.0e-10 67.4 69 69.6
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 5.0e-10 67.4 69 69.6
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 5.0e-10 67.4 69 69.6
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 5.0e-10 67.4 75 73.3
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 4.2e-09 64.3 76 68.4
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 5.5e-09 63.9 78 69.2
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 1.2e-08 62.8 73 53.4
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.2e-08 62.8 72 63.9
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.2e-08 62.8 72 63.9
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 1.2e-08 62.8 68 61.8
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 1.2e-08 62.8 68 61.8
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 1.6e-08 62.4 70 61.4
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 2.7e-08 61.6 74 74.3
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 2.7e-08 61.6 74 74.3
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 2.7e-08 61.6 70 58.6
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 4.7e-08 60.8 69 60.9
Sabra13G0084400 Salix brachista HOM05D003679 ORTHO05D004265 4.7e-08 60.8 68 61.8
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 6.1e-08 60.5 74 74.3
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 1.8e-07 58.9 67 59.7
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 2.3e-07 58.5 71 74.6
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 2.3e-07 58.5 71 74.6
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.3e-07 58.5 72 52.8
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 3.0e-07 58.2 68 52.9
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 3.0e-07 58.2 67 62.7
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.5e-06 55.8 38 78.9
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.0e-06 55.5 66 50.0
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 2.0e-06 55.5 66 50.0
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 2.6e-06 55.1 75 60.0


User provided reference genes

Program Settings