Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL108U10040 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 7.0e-84 313.9 160 100.0
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.2e-30 137.1 99 70.7
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.2e-30 137.1 99 70.7
Thhalv10017536m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 2.0e-30 136.3 149 56.4
BcaC02g12135 Brassica carinata HOM05D002909 ORTHO05D000493 2.2e-29 132.9 145 55.2
BolC4t22344H Brassica oleracea HOM05D002909 ORTHO05D000493 4.9e-29 131.7 145 55.9
BcaC02g12137 Brassica carinata HOM05D002909 ORTHO05D000493 2.7e-27 125.9 145 53.8
C04p07200 Brassica napus HOM05D002909 ORTHO05D000493 2.7e-27 125.9 145 53.8
AL6G44930 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 3.5e-27 125.6 149 54.4
AT3G03360 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 6.0e-27 124.8 151 52.3
Carub.0001s3546 Capsella rubella HOM05D002909 ORTHO05D000493 1.8e-26 123.2 149 53.0
AL1G15160 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 3.0e-26 122.5 148 51.4
BcaC05g28665 Brassica carinata HOM05D002909 ORTHO05D000493 5.6e-25 118.2 156 48.1
A03p22610 Brassica napus HOM05D000223 ORTHO05D001193 5.6e-25 118.2 144 51.4
BolC5t33510H Brassica oleracea HOM05D002909 ORTHO05D000493 5.6e-25 118.2 156 48.1
AL4G21500 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.3e-24 117.1 158 47.5
A05p31650 Brassica napus HOM05D002909 ORTHO05D000493 1.6e-24 116.7 156 46.8
CARHR093470 Cardamine hirsuta HOM05D002909 ORTHO05D000493 1.6e-24 116.7 147 51.0
BraA05t21998Z Brassica rapa HOM05D002909 ORTHO05D000493 2.8e-24 115.9 156 46.8
BcaB02g09042 Brassica carinata HOM05D002909 ORTHO05D000493 8.1e-24 114.4 151 47.7
Thhalv10015785m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 1.1e-23 114.0 163 47.9
AL4G15410 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 3.1e-23 112.5 159 47.8
AL1G67340 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 6.9e-23 111.3 154 46.8
Carub.0002s0507 Capsella rubella HOM05D002909 ORTHO05D000493 1.5e-22 110.2 159 48.4
Thhalv10027555m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 5.8e-22 108.2 142 53.5
Carub.0001s3547 Capsella rubella HOM05D002909 ORTHO05D000493 1.7e-21 106.7 157 45.2
A05p31390 Brassica napus HOM05D002909 ORTHO05D000493 3.8e-21 105.5 148 47.3
BraA05t21978Z Brassica rapa HOM05D002909 ORTHO05D000493 3.8e-21 105.5 148 47.3
Carub.0001s3549 Capsella rubella HOM05D002909 ORTHO05D000493 6.4e-21 104.8 159 45.3
CARHR093450 Cardamine hirsuta HOM05D002909 ORTHO05D000493 6.4e-21 104.8 149 49.7
AL6G12190 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.1e-20 104.0 161 42.9
Carub.0006s0171 Capsella rubella HOM05D002909 ORTHO05D000493 1.1e-20 104.0 161 42.9
C05p47700 Brassica napus HOM05D002909 ORTHO05D000493 1.4e-20 103.6 148 46.6
Carub.0001s3548 Capsella rubella HOM05D002909 ORTHO05D000493 1.9e-20 103.2 150 50.0
CARHR290810 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.5e-20 101.7 143 46.2
BolC5t33479H Brassica oleracea HOM05D002909 ORTHO05D000493 9.3e-20 100.9 148 45.9
AT1G49610 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 2.7e-19 99.4 143 49.7
CARHR210560 Cardamine hirsuta HOM05D002909 ORTHO05D000493 6.0e-19 98.2 154 46.8
Aa31LG1G22020 Aethionema arabicum HOM05D002909 ORTHO05D000493 7.9e-19 97.8 159 39.6
C09p73760 Brassica napus HOM05D002909 ORTHO05D000493 7.9e-19 97.8 152 44.7
BolC9t60109H Brassica oleracea HOM05D002909 ORTHO05D000493 7.9e-19 97.8 152 44.7
Thhalv10013441m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 7.9e-19 97.8 154 44.8
C05p47940 Brassica napus HOM05D002909 ORTHO05D000493 1.0e-18 97.4 155 40.0
BcaC05g28664 Brassica carinata HOM05D002909 ORTHO05D000493 1.3e-18 97.1 155 43.9
BolC5t33508H Brassica oleracea HOM05D002909 ORTHO05D000493 1.3e-18 97.1 155 43.9
A05p31410 Brassica napus HOM05D002909 ORTHO05D000493 1.8e-18 96.7 151 42.4
BraA05t21980Z Brassica rapa HOM05D002909 ORTHO05D000493 1.8e-18 96.7 151 42.4
Thhalv10025165m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 1.8e-18 96.7 148 46.6
BcaNung00595 Brassica carinata HOM05D002909 ORTHO05D000493 2.3e-18 96.3 145 45.5
BolC1t00339H Brassica oleracea HOM05D002909 ORTHO05D000493 2.3e-18 96.3 145 45.5
BcaB06g25936 Brassica carinata HOM05D002909 ORTHO05D000493 3.0e-18 95.9 151 44.4
C01p03500 Brassica napus HOM05D002909 ORTHO05D000493 5.1e-18 95.1 145 44.8
BraA01t00300Z Brassica rapa HOM05D002909 ORTHO05D000493 5.1e-18 95.1 144 45.1
BraA05t21995Z Brassica rapa HOM05D002909 ORTHO05D000493 5.1e-18 95.1 157 40.8
BcaB01g05867 Brassica carinata HOM05D002909 ORTHO05D000493 6.7e-18 94.7 156 45.5
C09p73770 Brassica napus HOM05D002909 ORTHO05D000493 6.7e-18 94.7 155 43.2
BolC9t60110H Brassica oleracea HOM05D002909 ORTHO05D000493 6.7e-18 94.7 155 43.2
Sp6g39690 Schrenkiella parvula HOM05D002909 ORTHO05D000493 8.7e-18 94.4 166 40.4
A05p31620 Brassica napus HOM05D002909 ORTHO05D000493 1.1e-17 94.0 157 39.5
BraA05t21996Z Brassica rapa HOM05D002909 ORTHO05D000493 4.3e-17 92.0 157 43.3
Carub.0006s0158 Capsella rubella HOM05D002909 ORTHO05D000493 4.3e-17 92.0 153 42.5
AL6G12200 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 9.6e-17 90.9 144 43.8
BcaC06g32019 Brassica carinata HOM05D002909 ORTHO05D000493 1.3e-16 90.5 160 39.4
A05p30760 Brassica napus HOM05D002909 ORTHO05D000493 1.6e-16 90.1 153 43.1
C09p73750 Brassica napus HOM05D002909 ORTHO05D000493 1.6e-16 90.1 166 41.0
AL1G56980 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.1e-16 89.7 97 54.6
BcaNung04729 Brassica carinata HOM05D002909 ORTHO05D000493 2.1e-16 89.7 166 41.0
BolC9t60108H Brassica oleracea HOM05D002909 ORTHO05D000493 2.1e-16 89.7 166 41.0
AL3G31320 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.8e-16 89.4 123 45.5
A03p04020 Brassica napus HOM05D002909 ORTHO05D000493 3.7e-16 89.0 152 42.1
A10p32850 Brassica napus HOM05D002909 ORTHO05D000493 3.7e-16 89.0 166 40.4
BraA10t45322Z Brassica rapa HOM05D002909 ORTHO05D000493 3.7e-16 89.0 166 40.4
AL6G12050 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 6.2e-16 88.2 156 44.2
BcaC06g32021 Brassica carinata HOM05D002909 ORTHO05D000493 8.2e-16 87.8 164 38.4
BcaB03g15699 Brassica carinata HOM05D002909 ORTHO05D000493 1.1e-15 87.4 152 35.5
C05p47740 Brassica napus HOM05D002909 ORTHO05D000493 1.4e-15 87.0 141 42.6
CARHR210690 Cardamine hirsuta HOM05D002909 ORTHO05D000493 1.8e-15 86.7 153 45.1
C03p01250 Brassica napus HOM05D002909 ORTHO05D000493 2.4e-15 86.3 161 42.9
BolC3t12684H Brassica oleracea HOM05D002909 ORTHO05D000493 2.4e-15 86.3 161 42.9
AT3G28410 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 3.1e-15 85.9 160 45.0
C09p31710 Brassica napus HOM05D002909 ORTHO05D000493 3.1e-15 85.9 138 43.5
C09p31760 Brassica napus HOM05D002909 ORTHO05D000493 3.1e-15 85.9 138 43.5
BolC9t56026H Brassica oleracea HOM05D002909 ORTHO05D000493 3.1e-15 85.9 138 43.5
BolC9t56033H Brassica oleracea HOM05D002909 ORTHO05D000493 3.1e-15 85.9 138 43.5
AL4G36770 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 4.0e-15 85.5 148 41.9
BcaC02g10939 Brassica carinata HOM05D002909 ORTHO05D000493 4.0e-15 85.5 159 40.9
A07p29890 Brassica napus HOM05D002909 ORTHO05D000493 4.0e-15 85.5 152 34.9
BraA07t29573Z Brassica rapa HOM05D002909 ORTHO05D000493 4.0e-15 85.5 159 40.9
AL6G12210 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 6.9e-15 84.7 149 43.0
AL380U10020 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 9.0e-15 84.3 148 41.2
AT5G02930 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 9.0e-15 84.3 147 42.2
BraA03t09745Z Brassica rapa HOM05D002909 ORTHO05D000493 9.0e-15 84.3 152 40.1
BcaC06g32020 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-14 84.0 159 40.9
A07p18610 Brassica napus HOM05D002909 ORTHO05D000493 1.2e-14 84.0 166 38.6
C09p73900 Brassica napus HOM05D002909 ORTHO05D000493 1.2e-14 84.0 146 43.8
CARHR210540 Cardamine hirsuta HOM05D002909 ORTHO05D000493 1.2e-14 84.0 141 45.4
Carub.0006s0172 Capsella rubella HOM05D002909 ORTHO05D000493 2.6e-14 82.8 148 39.9
Carub.0004s0321 Capsella rubella HOM05D002909 ORTHO05D000493 3.4e-14 82.4 155 40.0
BcaNung04728 Brassica carinata HOM05D002909 ORTHO05D000493 7.6e-14 81.3 144 40.3
CARHR210420 Cardamine hirsuta HOM05D002909 ORTHO05D000493 7.6e-14 81.3 156 35.9
BcaC06g32031 Brassica carinata HOM05D002909 ORTHO05D000493 1.7e-13 80.1 154 38.3
C09p73670 Brassica napus HOM05D002909 ORTHO05D000493 1.7e-13 80.1 160 38.8
BolC9t60097H Brassica oleracea HOM05D002909 ORTHO05D000493 1.7e-13 80.1 160 38.8
Sp2g05870 Schrenkiella parvula HOM05D002909 ORTHO05D000493 2.9e-13 79.3 144 38.2
SpUn0028_0070 Schrenkiella parvula HOM05D002909 ORTHO05D000493 2.9e-13 79.3 144 38.2
C05p48020 Brassica napus HOM05D002909 ORTHO05D000493 3.8e-13 79.0 103 46.6
AT5G02700 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 8.4e-13 77.8 158 42.4
BcaC04g22094 Brassica carinata HOM05D002909 ORTHO05D000493 8.4e-13 77.8 142 36.6
A09p18730 Brassica napus HOM05D002909 ORTHO05D000493 8.4e-13 77.8 144 38.2
C04p23450 Brassica napus HOM05D002909 ORTHO05D000493 1.1e-12 77.4 147 39.5
C05p46680 Brassica napus HOM05D002909 ORTHO05D000493 1.9e-12 76.6 152 39.5
BraA05t21915Z Brassica rapa HOM05D002909 ORTHO05D000493 1.9e-12 76.6 142 40.8
BcaNung03626 Brassica carinata HOM05D002909 ORTHO05D000493 2.5e-12 76.3 143 37.8
BraA05t21919Z Brassica rapa HOM05D002909 ORTHO05D000493 2.5e-12 76.3 149 41.6
A05p30770 Brassica napus HOM05D002909 ORTHO05D000493 3.2e-12 75.9 149 39.6
BraA07t29574Z Brassica rapa HOM05D002909 ORTHO05D000493 3.2e-12 75.9 150 42.0
CARHR015050 Cardamine hirsuta HOM05D002909 ORTHO05D000493 3.2e-12 75.9 159 36.5
Thhalv10026908m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 4.2e-12 75.5 151 37.7
A09p18750 Brassica napus HOM05D002909 ORTHO05D000493 5.5e-12 75.1 144 36.8
BraA09t37498Z Brassica rapa HOM05D002909 ORTHO05D000493 5.5e-12 75.1 144 36.8
BcaC02g09337 Brassica carinata HOM05D002909 ORTHO05D000493 7.1e-12 74.7 156 38.5
Thhalv10021970m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 7.1e-12 74.7 148 40.5
BcaNung03314 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-11 73.9 143 37.1
Thhalv10022165m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 1.2e-11 73.9 146 41.1
BolC6t38534H Brassica oleracea HOM05D002909 ORTHO05D000493 2.1e-11 73.2 152 32.9
BolC5t33489H Brassica oleracea HOM05D002909 ORTHO05D000493 4.6e-11 72.0 151 36.4
BcaC05g28567 Brassica carinata HOM05D002909 ORTHO05D000493 1.0e-10 70.9 147 39.5
BolC5t33396H Brassica oleracea HOM05D002909 ORTHO05D000493 1.0e-10 70.9 147 39.5
BcaB07g31152 Brassica carinata HOM05D002909 ORTHO05D000493 1.3e-10 70.5 144 38.2
C05p47960 Brassica napus HOM05D002909 ORTHO05D000493 1.3e-10 70.5 72 52.8
C07p04150 Brassica napus HOM05D002909 ORTHO05D000493 3.9e-10 68.9 149 41.6
CARHR210380 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.1e-10 68.6 116 42.2
BcaC05g28646 Brassica carinata HOM05D002909 ORTHO05D000493 8.7e-10 67.8 74 50.0
BolC7t40811H Brassica oleracea HOM05D002909 ORTHO05D000493 8.7e-10 67.8 150 40.7
BcaB01g05876 Brassica carinata HOM05D002909 ORTHO05D000493 1.1e-09 67.4 151 41.1
A03p00910 Brassica napus HOM05D002909 ORTHO05D000493 1.9e-09 66.6 151 37.7
BraA03t09473Z Brassica rapa HOM05D002909 ORTHO05D000493 1.9e-09 66.6 151 37.7
BcaNung03274 Brassica carinata HOM05D002909 ORTHO05D000493 5.7e-09 65.1 115 43.5
BolC3t12677H Brassica oleracea HOM05D002909 ORTHO05D000493 5.7e-09 65.1 151 40.4
CARHR210400 Cardamine hirsuta HOM05D002909 ORTHO05D000493 7.4e-09 64.7 116 41.4
BcaB05g21858 Brassica carinata HOM05D002909 ORTHO05D000493 1.6e-08 63.5 78 42.3
BcaC06g36437 Brassica carinata HOM05D002909 ORTHO05D000493 1.6e-08 63.5 141 40.4
Carub.0006s0173 Capsella rubella HOM05D002909 ORTHO05D000493 1.6e-08 63.5 104 38.5
AL3G41860 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.2e-08 63.2 86 44.2
BolC5t33490H Brassica oleracea HOM05D002909 ORTHO05D000493 2.8e-08 62.8 85 44.7
AL4G38580 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 6.3e-08 61.6 101 40.6
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 6.3e-08 61.6 69 52.2
C05p47750 Brassica napus HOM05D002909 ORTHO05D000493 8.2e-08 61.2 86 44.2
CARHR210390 Cardamine hirsuta HOM05D002909 ORTHO05D000493 8.2e-08 61.2 122 36.1
AL6G12220 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.8e-07 60.1 104 36.5
AL1G55004 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.4e-07 59.7 52 59.6
Thhalv10027265m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 2.4e-07 59.7 120 40.8
CARHR210580 Cardamine hirsuta HOM05D002909 ORTHO05D000493 4.1e-07 58.9 118 44.1
BcaC05g28642 Brassica carinata HOM05D002909 ORTHO05D000493 9.0e-07 57.8 91 42.9
BcaB01g05865 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-06 57.4 120 35.0
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 2.0e-06 56.6 69 47.8
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.0e-06 56.6 69 47.8
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 2.0e-06 56.6 69 47.8
A03p00970 Brassica napus HOM05D002909 ORTHO05D000493 2.6e-06 56.2 74 41.9
AL1G67360 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 5.9e-06 55.1 51 54.9
AL6G12380 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 5.9e-06 55.1 63 44.4
C03p01170 Brassica napus HOM05D002909 ORTHO05D000493 5.9e-06 55.1 124 40.3
AT1G57690 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 1.0e-05 54.3 64 48.4
A05p31430 Brassica napus HOM05D002909 ORTHO05D000493 1.0e-05 54.3 47 61.7
BraA05t21982Z Brassica rapa HOM05D002909 ORTHO05D000493 1.0e-05 54.3 47 61.7
Carub.0002s0692 Capsella rubella HOM05D002909 ORTHO05D000493 1.0e-05 54.3 50 60.0


User provided reference genes

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